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Report for CCDS48242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48242.1 Public Mus musculus 1 Cracdl 23 108 98 CCDS HistoryNCBI Gene:72097Re-query CCDS DB by CCDS ID:48242.1Re-query CCDS DB by GeneID:72097See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162875.7 ENSMUSP00000123803.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162875.7Link to Ensembl Protein Viewer:ENSMUSP00000123803.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162875Re-query CCDS DB by Protein ID:ENSMUSP00000123803
Original member NCBI NM_028096.1 NP_082372.1 Updated not alive Link to Nucleotide Sequence:NM_028096.1Link to Protein Sequence:NP_082372.1Re-query CCDS DB by Nucleotide ID:NM_028096Re-query CCDS DB by Protein ID:NP_082372
Current member NCBI NM_028096.2 NP_082372.1 Accepted alive Link to Nucleotide Sequence:NM_028096.2Link to Protein Sequence:NP_082372.1Re-query CCDS DB by Nucleotide ID:NM_028096Re-query CCDS DB by Protein ID:NP_082372Link to BLAST:NP_082372.1

Chromosomal Locations for CCDS 48242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37612257 37612396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37613337 37613481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37614481 37614668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37623761 37626068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37628217 37628426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37631321 37631482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37631816 37631951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37637861 37638029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37644561 37644630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3528 nt):
ATGATTTCCACGAGGGTGATGGACATTAAACTTCGGGAGGCTGCCGAAGGCCTTGGGGAAGATGGTGCAG
GAAAGAAAAAGTCGAAATTTAAAACTTTTAAGAAGCTGTTTGGGAAGAAGAAGAGAAAGGAATCCCCCTC
ACCCACAGGAAACAGCGCCTGGAAGCAAAATCCGGCCAAGAGCGAGGTCATTGCCGTTGAGGAGTCGGGG
CCCGTGTATGACTCTGAAGATGAGCTGGAGGAGTCCAGGGGTACTATGGGCAGCCGGGCCCTCTCCCACG
ACAGTATTTTCTTTCCTGAATCGGGACAGGACCCTGCTCGGCCCGTGCGGGTGTTCTCCCAAGAAAATGT
GTGCGACCGGATCAAGGCTTTGCAGTTAAAGATACAATGTAACGTGAAGATGGGGCCACCGCCTCCAGGA
GGCCTTCCTATCAAGCGGGCAGAGGAAACCGGCATGAGTTCTGAGGATGACGGACTGCCCCGCAGCCCCC
CAGAGATGTCCCTGCTGCACGATGTGGGTCCAGGCACAACTATAAAGATCCTAGTGTCCTCGTCCCGGCC
ACAGTCTCCCGACCACATGAGCGATGCCTCCATCTCGTCTCGGACCTTGGATGGTAGCCTAGCTCCTGTG
GTTGACTTCAGCCACCCTCCAGAATTCTCTTCCTGCCTGGACAACTCTGCAGCTAAACACAAACTCCTGG
TGAAGCCCCGCAACCAGCGATCAAGTAAACTGAGGCGGCTGTCTTCGAGGGCGCAGTCTGAGTGCCTGAG
TGACCTGTCGTGGACCCTAGATGAGGAAGACTATGAGGAGAAGCCATTGCTTCATGTCAGCATGGAAGAA
ACCCCGGACGCTAGGCAGCGGGATTTGATACCAGGCAGAAGGCCTGAGTTTGGGGGACCTGCAACCTTTC
TGTCACCTGGGGGGGCCTGTGCCAGGCGTGCTCGCCTACAGCACAGCATGGCAGTCAGTGCCAGCATGGA
GGAGGGAGGCTGTCCTAGAGATGAACCCTCAAGCCTTCCAGCTACGCCAGAAGTTACTGAGCCCATGGTG
GTCTCAGTCCCAAGCTTGGAGTCCCCATCTCTGCCAGAAAGTTCTCCAAACCATATTCTCCATAGTAAGA
GCCAGAAGGAAGAGCTGTCCCCTGGAGGCCTGTGTCCCCTAGTGGAGAGTACATCAGAGGAGGCTCCTTG
TGGTTCTGGAGTTGCAGAAACCCCTCTATCTACTGATGTCCCTGAGAGGGACATGGGACCTTCCAAGGAG
GGCTCTGCACCTCCTGAGGGAGACCCAGCATTTTCTGAAAGACACATGGCATTCCCTGGAGGGGGTAGCA
TACCTCCTGAAGGAAACACAACACCTCACAAGGGTGTCATGGAACCTCCCGAGAGAGACATGTCACCTTC
CAAGGACAACATGGCACCTCCCAAGAGGATCATAGCACCTCCAGAGAGAGACATGTTACCTTCTGAGGGA
GATGTGGCACCTCCCAAGAGGATCATGGCACCCCCAGAGAGAGACATGTCACCTCCCGAGGGAGATGTGG
CACCTCCCAAGAAGATCATGGCACCCCCAGAGAGAGACATGTCACCTCCCGAGGGAGATGTGGCACCTCC
CAAGAAGATCATGGCACCCCCAGAGAGAGACATGTCACCTCCCGAGGGAGATGTGGCACCTCCCAAGAAG
ATCATGGCACCCCCAGAGAGAGACATGTCACCTTCCGAGGGAGATGTGGCACCTCCCAAGAAGATCATGG
CACCCCCAGAGAGAGACATGTCACCTCCCGAAGGAGATGTGGCACCTCCCAAGAAGATCATGGCACCCCC
AGAAAGAGACTTGTCACCTTCTGAGGGAGATGTGGCACCTCCCAAGAGGATCATGGCACCCCCAGAGAGG
GACATGTCACCTTTCAAGGGTGACATGGCACCACCCAAAGGAATCATGGAGCCTCCTAATAGGGACACAT
CACTTCCAAAGGGAGACACACCACCTCCTGAGACTATCACTGATACCAACTTGGAGACACCTTCAGATAC
AGAGAGACAGGACCAAAGTGTCCAGAAGGAAGAGGAGCTGACCCTGGTGGTGGTACCCAGGCCTGAGGGA
GTGGGGACAGAGTCTTCCACAGCCCCTGCCCCAAGCCCTCCAGTACCCAAGAGCTGCCTGAAGCACAAGG
CCTTGGTCACCAGTGGGTCCCCTGCAGAGTCTCCTCTGAAAGAGCCTGGCCCAGCAGTCCAAGACAAAGC
AGTTGTGCCTCCCGCCCGCCCCAGGCCTACACAGGCTGCAACCTCAGGAGGTCCAGAGAGAACAGCCCTG
GGGAGAAAGAACGAGCGGAGTGCAGAGCCACAGCGCAGCAGCGTTAAGAGGTTTTCTGTGACCTCCAGCA
GGGCACGTGCCCGTGTCAGCGGCTCTCGCCTTCCGGAGTATTCTGCACATGTGCCTGCAGGGGGCCGAGC
ACCCTTGCTGCGGAGTGGCCTTGCCTGGAAGAGTGAGGCAGCACTTGACGACCTTCAGGTGCTGCCAAAG
CCACAGGACCGGAAGACAATGGGTGGTGACCCTCAAAACTCAGGGGATGTGGGGGCCGGCCAGGCAGGAC
CGGGCAAGAGCCCCCAGGAAGCTGAGCCATGTGCCTCCTCTGTGCAGGAGCCAGCCAATGGGGAGGACCA
GAGCCCCTTCCCAGTCAAGCTGCGGTCCACCTCACTCTCACTTAAATACAGAGACAGCTCTGCCCAAGAG
GCCAAAGCCATCAAGAGGTACAGCGCCGAAGTCAGGTTGGAGAAAGGAGGCCTGGCTCTGCTTCCCAAAG
ATGAACAGAGCCACGTCGGGGCAGCTCCTGCACTGCGAGGCTCCAGGTCCCCCAACGGGCAAGGGAAAGG
AAAGACCAGGTCTCCTGAGCAGCCAGGTACCAAGCCACCCCTGCCCAGGAAGCCACTTCTGCCGAGCCTT
ACCTTGCCATACCCACCCACAGGCCTGGATACCAGCCCTGGGGAGTCTGAGAGACTCATACCGGTCATCC
TGCCTCCCGAGCCCAGGAAGGAGAAATTGTCCAATCAGGGAGCTGAAAAGGGTCAGCCTCCTGCGGCTAC
AGGTCCTGGGGCTGATGGGCAACCCACCCCACCCTGGATCACCATGGCCCGGCAGAAGAGAAGAGGAGCC
CCAGACCTGCCCGTCAACCAGGAAGAGAAACCTGGGTCGAGGATCCTAAAGACAGAAACTGGGAAGCAAG
CCAAGGTGGCCGAGAGAGCCCAGGAGTCTGTGAAGCAGGGTGACTTCGTCCGGAGCAAATCTTTCCTGAT
GACCCCTGCAAAGCCTGCTGTGACCCAGAGGCAGGGGTCAAAACTGAACCTCAAGGAAGGGCTACAGAGA
GGAATCTCACTGTCCCATCAGAACTTGGCTCAGGCTGCAGCGACCACAGAGAAGGAACTTCATCAGCTGA
AGAGGGCCAGTTACGCCAGTACAGATCAGCCATCCTGGATGGAACTCGCCAGAAAGAAATCTCAAGCCTG
GAGCGACATGCCCCAAATCATAAAATAG

Translation (1175 aa):
MISTRVMDIKLREAAEGLGEDGAGKKKSKFKTFKKLFGKKKRKESPSPTGNSAWKQNPAKSEVIAVEESG
PVYDSEDELEESRGTMGSRALSHDSIFFPESGQDPARPVRVFSQENVCDRIKALQLKIQCNVKMGPPPPG
GLPIKRAEETGMSSEDDGLPRSPPEMSLLHDVGPGTTIKILVSSSRPQSPDHMSDASISSRTLDGSLAPV
VDFSHPPEFSSCLDNSAAKHKLLVKPRNQRSSKLRRLSSRAQSECLSDLSWTLDEEDYEEKPLLHVSMEE
TPDARQRDLIPGRRPEFGGPATFLSPGGACARRARLQHSMAVSASMEEGGCPRDEPSSLPATPEVTEPMV
VSVPSLESPSLPESSPNHILHSKSQKEELSPGGLCPLVESTSEEAPCGSGVAETPLSTDVPERDMGPSKE
GSAPPEGDPAFSERHMAFPGGGSIPPEGNTTPHKGVMEPPERDMSPSKDNMAPPKRIIAPPERDMLPSEG
DVAPPKRIMAPPERDMSPPEGDVAPPKKIMAPPERDMSPPEGDVAPPKKIMAPPERDMSPPEGDVAPPKK
IMAPPERDMSPSEGDVAPPKKIMAPPERDMSPPEGDVAPPKKIMAPPERDLSPSEGDVAPPKRIMAPPER
DMSPFKGDMAPPKGIMEPPNRDTSLPKGDTPPPETITDTNLETPSDTERQDQSVQKEEELTLVVVPRPEG
VGTESSTAPAPSPPVPKSCLKHKALVTSGSPAESPLKEPGPAVQDKAVVPPARPRPTQAATSGGPERTAL
GRKNERSAEPQRSSVKRFSVTSSRARARVSGSRLPEYSAHVPAGGRAPLLRSGLAWKSEAALDDLQVLPK
PQDRKTMGGDPQNSGDVGAGQAGPGKSPQEAEPCASSVQEPANGEDQSPFPVKLRSTSLSLKYRDSSAQE
AKAIKRYSAEVRLEKGGLALLPKDEQSHVGAAPALRGSRSPNGQGKGKTRSPEQPGTKPPLPRKPLLPSL
TLPYPPTGLDTSPGESERLIPVILPPEPRKEKLSNQGAEKGQPPAATGPGADGQPTPPWITMARQKRRGA
PDLPVNQEEKPGSRILKTETGKQAKVAERAQESVKQGDFVRSKSFLMTPAKPAVTQRQGSKLNLKEGLQR
GISLSHQNLAQAAATTEKELHQLKRASYASTDQPSWMELARKKSQAWSDMPQIIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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