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Report for CCDS48073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48073.1 Public Homo sapiens X XG 24 110 108 CCDS HistoryNCBI Gene:7499Re-query CCDS DB by CCDS ID:48073.1Re-query CCDS DB by GeneID:7499See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48073.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000644266.2 ENSP00000494087.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000644266.2Link to Ensembl Protein Viewer:ENSP00000494087.1Re-query CCDS DB by Nucleotide ID:ENST00000644266Re-query CCDS DB by Protein ID:ENSP00000494087
Original member Current member NCBI NM_001141919.2 NP_001135391.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001141919.2Link to Protein Sequence:NP_001135391.1Re-query CCDS DB by Nucleotide ID:NM_001141919Re-query CCDS DB by Protein ID:NP_001135391Link to BLAST:NP_001135391.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135391.1 195 P55808-3 195 100% 0 0

Chromosomal Locations for CCDS 48073.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 2752275 2752335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2770550 2770591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2774716 2774739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2782066 2782128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2789644 2789706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2794535 2794603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2797310 2797360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2806701 2806745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2808185 2808220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2811336 2811452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2814364 2814380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGGAGAGCTGGTGGGGACTTCCCTGTCTTGCGTTCCTGTGTTTTCTAATGCACGCCCGAGGTCAAAGAG
ACTTTGATTTGGCAGATGCCCTTGATGACCCTGAACCCACCAAGAAGCCAAACTCAGATATCTACCCAAA
GCCAAAACCACCTTACTACCCACAGCCCGAGAATCCCGACAGCGGTGGAAATATCTACCCAAGGCCAAAG
CCACGCCCTCAACCCCAGCCTGGCAATTCCGGCAACAGTGGAGGTTACTTCAATGATGTGGACCGTGATG
ACGGACGCTACCCGCCCAGGCCCAGGCCACGGCCGCCTGCAGGAGGTGGCGGCGGTGGCTACTCCAGTTA
TGGCAACTCCGACAACACGCACGGAAGAGGGGGCTATAGACTCAACTCTCGTTATGGAAATACTTATGGT
GGAGATCACCATTCAACGTATGGCAATCCAGAAGGCAATATGGTAGCAAAAATCGTGTCTCCCATCGTAT
CCGTGGTGGTGGTGACACTGCTGGGAGCAGCAGCCAGTTATTTCAAACTAAACAATAGGAGAAATTGTTT
CAGGACCCATGAACCAGAAAATGTCTGA

Translation (195 aa):
MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPK
PRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYG
GDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPENV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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