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Report for CCDS48054.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48054.1 Public Homo sapiens 9 SOHLH1 24 110 108 CCDS HistoryNCBI Gene:402381Re-query CCDS DB by CCDS ID:48054.1Re-query CCDS DB by GeneID:402381See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48054.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000425225.2 ENSP00000404438.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000425225.2Link to Ensembl Protein Viewer:ENSP00000404438.1Re-query CCDS DB by Nucleotide ID:ENST00000425225Re-query CCDS DB by Protein ID:ENSP00000404438
Original member Current member NCBI NM_001101677.2 NP_001095147.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001101677.2Link to Protein Sequence:NP_001095147.2Re-query CCDS DB by Nucleotide ID:NM_001101677Re-query CCDS DB by Protein ID:NP_001095147Link to BLAST:NP_001095147.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001095147.2 387 Q5JUK2-2 387 100% 0 0

Chromosomal Locations for CCDS 48054.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 135693597 135693814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135694387 135694457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135695050 135695263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135696612 135696805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135697506 135697627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135698329 135698476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135698995 135699126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135699403 135699467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGGCGTCCCGGTGCTCCGAGCCCTACCCGGAGGTCTCCAGAATCCCTACCGTCAGGGGATGCAACGGCT
CCCTGTCTGGTGCCCTCTCCTGCTGCGAGGACTCGGCCCGGGGCTCGGGCCCGCCCAAGGCCCCTACGGT
GGCCGAGGGTCCCAGCTCCTGCCTTCGGCGGAACGTGATCAGCGAGAGGGAGCGCAGGAAGCGGATGTCG
TTGAGCTGTGAGCGTCTGCGGGCCCTGCTGCCCCAGTTCGATGGCCGGCGGGAGGACATGGCCTCGGTCC
TGGAGATGTCTGTGCAGTTCCTGCGGCTTGCCAGCGCCCTGGGGCCCAGTCAGGAGCAGCACGCTATTCT
TGCTTCCTCCAAGGAAATGTGGCACTCGTTGCAGGAGGATGTTTTACAGTTGACGTTGTCGAGTCAGATT
CAAGCAGGTGTGCCAGACCCTGGGACGGGAGCGTCCAGCGGGACTCGAACCCCAGATGTGAAGGCGTTTC
TGGAAAGTCCTTGGTCCCTGGATCCAGCGTCGGCCAGCCCAGAGCCCGTGCCGCACATCCTTGCGTCCTC
CAGGCAGTGGGACCCCGCGAGCTGCACGTCCCTGGGCACGGACAAGTGTGAGGCACTGTTGGGGCTGTGC
CAGGTGCGGGGTGGGCTGCCCCCTTTCTCAGAACCTTCCAGCCTGGTGCCGTGGCCCCCAGGCCGGAGTC
TTCCTAAGGCTGTGAGGCCACCCCTGTCCTGGCCTCCGTTCTCGCAGCAGCAGACCTTGCCCGTGATGAG
CGGGGAGGCCCTTGGCTGGCTGGGCCAGGCTGGGCCCCTGGCCATGGGGGCTGCACCTCTGGGGGAGCCA
GCCAAGGAGGACCCCATGCTGGCGCAGGAGGCCGGGTCTGCGTTGGGGTCTGATGTGGACGATGGGACGT
CCTTCCTGCTGACTGCTGGTCCCAGCTCGTGGCCGGGGTCTCTGGAGGGTCGAGGAGGCAGTGGCCCTGC
ATGGGCCCCAGCTGAGAGCAGTCCACTGGATGTTGGAGAGCCAGGCTTCCTAGGGGACCCTGAGCTTGGC
TCCCAGGAGCTCCAGGACAGCCCTCTGGAGCCGTGGGGCCTGGATGTGGACTGTGCAGGCCTGGCCCTGA
AGGACGAGGTGGAGAGCATCTTCCCTGACTTCTTTGCCTGCTAG

Translation (387 aa):
MASRCSEPYPEVSRIPTVRGCNGSLSGALSCCEDSARGSGPPKAPTVAEGPSSCLRRNVISERERRKRMS
LSCERLRALLPQFDGRREDMASVLEMSVQFLRLASALGPSQEQHAILASSKEMWHSLQEDVLQLTLSSQI
QAGVPDPGTGASSGTRTPDVKAFLESPWSLDPASASPEPVPHILASSRQWDPASCTSLGTDKCEALLGLC
QVRGGLPPFSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPVMSGEALGWLGQAGPLAMGAAPLGEP
AKEDPMLAQEAGSALGSDVDDGTSFLLTAGPSSWPGSLEGRGGSGPAWAPAESSPLDVGEPGFLGDPELG
SQELQDSPLEPWGLDVDCAGLALKDEVESIFPDFFAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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