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Report for CCDS47923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47923.1 Public Homo sapiens 8 SLA 24 110 108 CCDS HistoryNCBI Gene:6503Re-query CCDS DB by CCDS ID:47923.1Re-query CCDS DB by GeneID:6503See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47923.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427060.6 ENSP00000394049.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427060.6Link to Ensembl Protein Viewer:ENSP00000394049.2Re-query CCDS DB by Nucleotide ID:ENST00000427060Re-query CCDS DB by Protein ID:ENSP00000394049
Original member Current member NCBI NM_006748.4 NP_006739.2 Accepted alive Link to Nucleotide Sequence:NM_006748.4Link to Protein Sequence:NP_006739.2Re-query CCDS DB by Nucleotide ID:NM_006748Re-query CCDS DB by Protein ID:NP_006739Link to BLAST:NP_006739.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006739.2 316 Q13239-5 316 100% 0 0

Chromosomal Locations for CCDS 47923.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 133038524 133038737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133039998 133040130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133044984 133045115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133047830 133047933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133049902 133049988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133050816 133050915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133060100 133060280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGCTCTCTAAACTGGGTCATTCTCCACTTGGAGGGCTCAGGGCACGGTTGACTTTCCCCGTCTGTCTCC
TATACCACAGGCTCTGGGCATCACCAGCGGCCCCAGGGAAAAAGAAAGAAATGGGAAACAGCATGAAATC
CACCCCTGCGCCTGCCGAGAGGCCCCTGCCCAACCCGGAGGGACTGGATAGCGACTTCCTTGCCGTGCTA
AGTGACTACCCGTCTCCTGACATCAGCCCCCCGATATTCCGCCGAGGGGAGAAACTGCGTGTGATTTCTG
ATGAAGGGGGCTGGTGGAAAGCTATTTCTCTTAGCACTGGTCGAGAGAGTTACATCCCTGGAATATGTGT
GGCCAGAGTTTACCATGGCTGGCTGTTTGAGGGCCTGGGCAGAGACAAGGCCGAGGAGCTGCTGCAGCTG
CCAGACACAAAGGTCGGCTCCTTCATGATCAGAGAGAGTGAGACCAAGAAAGGGTTTTACTCACTGTCGG
TGAGACACAGGCAGGTAAAGCATTACCGCATTTTCCGTCTGCCCAACAACTGGTACTACATTTCCCCGAG
GCTCACCTTCCAGTGCCTGGAGGACCTGGTGAACCACTATTCTGAGGTGGCTGATGGCCTGTGCTGTGTG
CTCACCACGCCCTGCCTGACACAAAGCACGGCTGCCCCAGCAGTGAGGGCCTCCAGCTCACCTGTCACCT
TGCGTCAGAAGACTGTGGACTGGAGGAGAGTGTCCAGACTGCAGGAGGACCCCGAGGGAACAGAGAACCC
GCTTGGGGTAGACGAGTCCCTTTTCAGCTATGGCCTTCGAGAGAGCATTGCCTCTTACCTGTCCCTGACC
AGTGAGGACAACACCTCCTTTGATCGAAAGAAGAAAAGCATCTCCCTGATGTATGGTGGCAGCAAGAGAA
AGAGCTCATTCTTCTCATCACCACCTTACTTTGAGGACTAG

Translation (316 aa):
MLSKLGHSPLGGLRARLTFPVCLLYHRLWASPAAPGKKKEMGNSMKSTPAPAERPLPNPEGLDSDFLAVL
SDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARVYHGWLFEGLGRDKAEELLQL
PDTKVGSFMIRESETKKGFYSLSVRHRQVKHYRIFRLPNNWYYISPRLTFQCLEDLVNHYSEVADGLCCV
LTTPCLTQSTAAPAVRASSSPVTLRQKTVDWRRVSRLQEDPEGTENPLGVDESLFSYGLRESIASYLSLT
SEDNTSFDRKKKSISLMYGGSKRKSSFFSSPPYFED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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