NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47921.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47921.1 Public Homo sapiens 8 TMEM71 24 110 108 CCDS HistoryNCBI Gene:137835Re-query CCDS DB by CCDS ID:47921.1Re-query CCDS DB by GeneID:137835See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47921.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377901.8 ENSP00000367133.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377901.8Link to Ensembl Protein Viewer:ENSP00000367133.4Re-query CCDS DB by Nucleotide ID:ENST00000377901Re-query CCDS DB by Protein ID:ENSP00000367133
Original member Current member NCBI NM_001145153.2 NP_001138625.1 Accepted alive Link to Nucleotide Sequence:NM_001145153.2Link to Protein Sequence:NP_001138625.1Re-query CCDS DB by Nucleotide ID:NM_001145153Re-query CCDS DB by Protein ID:NP_001138625Link to BLAST:NP_001138625.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138625.1 232 Q6P5X7-3 232 100% 0 0

Chromosomal Locations for CCDS 47921.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 132710967 132710982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132713995 132714052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132714154 132714215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132722040 132722115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132746942 132747114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132751785 132751997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132757234 132757294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132758840 132758879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGTACCGAATATCTCAACTGATGTCAACACCAGTAGCAAGTTCTTCCAGGTTGGAAAGAGAATATGCTG
GAGAGCTGTCTCCCACGTGCATTTTCCCAAGTTTCACCTGTGATTCCCTGGATGGTTACCATTCTTTTGA
ATGCGGCTCCATAGATCCCCTGACAGGCTCCCACTATACCTGTCGCCGAAGTCCCAGACTCCTCACCAAT
GGCTACTATATTTGGACTGAAGACAGCTTCCTGTGCGACAAAGATGGCAACATAACTCTGAACCCATCCC
AGACCAGCGTTATGTATAAGGAGAACTTAGTTAGGATATTTAGAAAGAAAAAGAGAATCTGCCATTCCTT
TTCTTCTCTCTTCAACCTCAGTACCTCCAAATCTTGGCTGCATGGAAGTATCTTTGGTGACATCAACTCT
TCTCCAAGTGAAGACAACTGGTTGAAGGGGACCAGGAGGTTGGACACAGACCATTGCAATGGAAATGAAA
CCAGGTTGTTGCAAGAGGTCTTCTTTCAGGCAATCCTGCTTGCTGTGTGCTTAATCATTTCTGCATGTGC
AAGATGGTTTATGGGAGAAATATTAGCCAGTGTCTTCACATGCTCATTGATGATAACTGTAGCTTATGTG
AAATCATTGTTTCTCAGCCTTGCCAGCTATTTCAAAACCACTGCCTGTGCTCGGTTTGTCAAAATTTGA

Translation (232 aa):
MYRISQLMSTPVASSSRLEREYAGELSPTCIFPSFTCDSLDGYHSFECGSIDPLTGSHYTCRRSPRLLTN
GYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLVRIFRKKKRICHSFSSLFNLSTSKSWLHGSIFGDINS
SPSEDNWLKGTRRLDTDHCNGNETRLLQEVFFQAILLAVCLIISACARWFMGEILASVFTCSLMITVAYV
KSLFLSLASYFKTTACARFVKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH