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Report for CCDS47624.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47624.1 Public Homo sapiens 7 PHTF2 24 110 108 CCDS HistoryNCBI Gene:57157Re-query CCDS DB by CCDS ID:47624.1Re-query CCDS DB by GeneID:57157See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47624.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415251.6 ENSP00000408035.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415251.6Link to Ensembl Protein Viewer:ENSP00000408035.2Re-query CCDS DB by Nucleotide ID:ENST00000415251Re-query CCDS DB by Protein ID:ENSP00000408035
Original member Current member NCBI NM_001127360.2 NP_001120832.1 Accepted alive Link to Nucleotide Sequence:NM_001127360.2Link to Protein Sequence:NP_001120832.1Re-query CCDS DB by Nucleotide ID:NM_001127360Re-query CCDS DB by Protein ID:NP_001120832Link to BLAST:NP_001120832.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120832.1 352 Q8N3S3-6 352 100% 0 0

Chromosomal Locations for CCDS 47624.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 77840256 77840300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 77893608 77893664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 77900711 77900780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 77901762 77901920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 77908793 77908958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 77910245 77910409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 77920279 77920465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 77922623 77922832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGGCGTCCAAAGTCACAGATGCTATAGTCTGGTATCAAAAGAAGATTGGAGCATATGATCAACAAATAT
GGGAAAAATCTGTTGAACAGAGAGAAATCAAGGGGCTAAGGAATAAACCAAAGAAAACAGCACATGTGAA
ACCAGACCTCATAGATGTTGATCTTGTAAGAGGGTCTGCATTTGCAAAGGCAAAGCCTGAAAGTCCTTGG
ACTTCTCTGACCAGAAAGGGAATTGTTCGAGTTGTATTTTTCCCCTTTTTCTTCCGGTGGTGGTTACAAG
TAACATCAAAGGTCATCTTTTTCTGGCTTCTTGTCCTTTATCTTCTTCAAGTTGCTGCAATAGTATTATT
CTGCTCCACTTCTAGCCCACACAGCATACCTCTGACAGAGGTGATTGGGCCGATATGGCTGATGCTGCTC
CTGGGAACTGTGCATTGCCAGATTGTTTCCACAAGAACACCCAAACCTCCTCTAAGTACAGGGGGTAAAA
GAAGAAGGAAATTAAGAAAAGCAGCCCATTTGGAAGTACATAGGGAAGGAGATGGTTCTAGTACCACAGA
TAACACACAAGAGGGAGCAGTTCAGAACCACGGTACAAGCACCTCTCACAGCGTTGGCACTGTCTTCAGA
GATCTCTGGCATGCTGCTTTCTTTTTATCAGGATCAAAGAAAGCAAAGAATTCAATTGATAAATCAACTG
AAACTGACAATGGCTATGTATCCCTTGATGGGAAGAAGACTGTTAAAAGCGGTGAAGATGGAATACAAAA
CCATGAACCTCAGTGTGAAACTATTCGACCAGAAGAGACAGCCTGGAACACAGGAACACTGAGGAATGGT
CCTAGCAAAGATACCCAAAGGACAATAACAAATGTCTCTGATGAAGTCTCCAGTGAGGAAGGTCCTGAAA
CAGGATACTCATTACGTCGTCATGTGGACAGGACTTCTGAAGGTGTTCTTCGGAATAGAAAGTCACACCA
TTATAAGAAACATTACCCTAATGAGGTATATACTTTGTCCTTAAGTGTATACATACGTATCTATTTTATA
TGTTACTAA

Translation (352 aa):
MASKVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPW
TSLTRKGIVRVVFFPFFFRWWLQVTSKVIFFWLLVLYLLQVAAIVLFCSTSSPHSIPLTEVIGPIWLMLL
LGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQNHGTSTSHSVGTVFR
DLWHAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSGEDGIQNHEPQCETIRPEETAWNTGTLRNG
PSKDTQRTITNVSDEVSSEEGPETGYSLRRHVDRTSEGVLRNRKSHHYKKHYPNEVYTLSLSVYIRIYFI
CY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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