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Report for CCDS47594.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47594.1 Public Homo sapiens 7 ZNF680 24 110 108 CCDS HistoryNCBI Gene:340252Re-query CCDS DB by CCDS ID:47594.1Re-query CCDS DB by GeneID:340252See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47594.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447137.2 ENSP00000393506.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447137.2Link to Ensembl Protein Viewer:ENSP00000393506.2Re-query CCDS DB by Nucleotide ID:ENST00000447137Re-query CCDS DB by Protein ID:ENSP00000393506
Original member Current member NCBI NM_001130022.2 NP_001123494.1 Accepted alive Link to Nucleotide Sequence:NM_001130022.2Link to Protein Sequence:NP_001123494.1Re-query CCDS DB by Nucleotide ID:NM_001130022Re-query CCDS DB by Protein ID:NP_001123494Link to BLAST:NP_001123494.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123494.1 123 Q8NEM1-2 123 100% 0 0

Chromosomal Locations for CCDS 47594.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 64526399 64526517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64543707 64543802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64544306 64544432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64562925 64562954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGCCAGGACCACCTGGAAGCCTAGAAATGGGACCACTGACATTTAGGGATGTGGCCATAGAATTCTCTC
TGGAGGAGTGGCAATGCCTGGACACTGCACAACGGAATTTATATAGGAAAGTGATGTTTGAGAACTACAG
AAACCTGGTCTTCCTGGGTATTGCTGTCTCTAAGCCTCACCTGATAACCTGTTTGGAGCAAGGAAAAGAG
CCCTGGAATAGGAAGAGACAGGAGATGGTAGCCAAACCCCCAGAGTCTTACTGTGTTGCTCAGGCTGATC
TTGAACTCCTGGTCTCAAGTTATCTTACTGCCTTGGCCTCCCTAAAGATGTGGGATTACAGAAATAATCC
ACTTTGCCAGGCTACTATGTAG

Translation (123 aa):
MPGPPGSLEMGPLTFRDVAIEFSLEEWQCLDTAQRNLYRKVMFENYRNLVFLGIAVSKPHLITCLEQGKE
PWNRKRQEMVAKPPESYCVAQADLELLVSSYLTALASLKMWDYRNNPLCQATM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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