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Report for CCDS47527.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47527.2 Public Homo sapiens 7 IQCE 24 110 108 CCDS HistoryNCBI Gene:23288Re-query CCDS DB by CCDS ID:47527.2Re-query CCDS DB by GeneID:23288See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 47527.2
The coding region was updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47527.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000611775.4 ENSP00000480668.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611775.4Link to Ensembl Protein Viewer:ENSP00000480668.1Re-query CCDS DB by Nucleotide ID:ENST00000611775Re-query CCDS DB by Protein ID:ENSP00000480668
Original member Current member NCBI NM_001287500.2 NP_001274429.1 Accepted alive Link to Nucleotide Sequence:NM_001287500.2Link to Protein Sequence:NP_001274429.1Re-query CCDS DB by Nucleotide ID:NM_001287500Re-query CCDS DB by Protein ID:NP_001274429Link to BLAST:NP_001274429.1

Chromosomal Locations for CCDS 47527.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 2559182 2559217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2568954 2568999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2571526 2571654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2572192 2572326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2573418 2573488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2578242 2578355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2578476 2578526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2582580 2582650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2583637 2583709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2584236 2584285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2586208 2586371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2587822 2587877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2589907 2590106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2593022 2593126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2594886 2594976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2598465 2598632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2601441 2601464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2604881 2604991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2605876 2605997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2607124 2607367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGTTCCTGGGCACCGGGGAGCCGGCCTTGGACACGAAAGCAAAAAGGAAAGCTTTCCACAAACCTCCAC
CCACATCGCCAAAGTCACCTTATCTCTCTAAGCCGAGAAAAGTGGCCTCCTGGAGGTCCCTCAGGACGGC
AGGGAGCATGCCTCTGGGCGGCCGAGCGTCCCTGACCCCGCAGAAGCTGTGGCTGGGAACCGCAAAGCCA
GGAAGTCTGACCCAGGCCCTGAACTCACCCCTCACCTGGGAGCATGCGTGGACTGGCGTCCCCGGCGGCA
CTCCTGACTGTCTGACAGACACCTTCAGAGTGAAGAGGCCACATCTCAGGCGCTCTGCCAGCAACGGTCA
TGTCCCTGGGACTCCTGTCTACAGAGAAAAAGAAGATATGTATGACGAGATTATTGAGTTAAAGAAGTCA
TTGCACGTGCAGAAGAGCGACGTGGACCTGATGAGAACGAAGCTCCGGCGCCTGGAGGAGGAAAACAGCA
GGAAGGACCGGCAGATAGAGCAGCTCCTGGATCCCAGCCGCGGCACGGATTTTGTTCGGACTCTGGCAGA
GAAAAGGCCCGATGCCAGTTGGGTCATTAACGGGCTGAAGCAGAGGATCCTGAAGCTGGAACAGCAGTGC
AAGGAGAAGGACGGCACCATCAGCAAACTCCAGACCGATATGAAGACTACCAACCTGGAAGAGATGCGGA
TCGCCATGGAGACATACTACGAGGAGGTGCATCGTCTCCAGACCCTCTTGGCAAGTTCTGAAACCACCGG
AAAGAAGCCCCTGGGGGAGAAGAAGACGGGCGCCAAAAGGCAGAAGAAGATGGGCAGTGCCCTCCTGAGC
TTGTCCCGGAGTGTCCAGGAGCTCACGGAAGAGAACCAGAGCCTGAAGGAGGACCTGGACCGCGTGCTGA
GCACCTCCCCAACCATCTCCAAGACACAGGGTTATGTGGAGTGGAGCAAGCCCCGGCTGCTGAGGCGCAT
TGTGGAGCTGGAGAAGAAACTAAGTGTGATGGAGAGCTCAAAATCACACGCCGCAGAGCCAGTCAGATCA
CACCCGCCAGCCTGCCTTGCATCCAGCTCTGCGCTGCACAGACAGCCACGAGGGGACCGCAACAAGGACC
ACGAGCGTCTCCGAGGGGCTGTGAGAGACCTGAAGGAAGAGCGGACCGCGCTGCAGGAGCAGCTGCTGCA
GAGAGATTTGGAGGTGAAGCAGCTCCTGCAGGCGAAGGCCGACCTGGAGAAGGAGCTGGAGTGCGCGAGG
GAGGGCGAGGAGGAGAGGAGAGAGCGAGAGGAGGTTTTGAGAGAGGAGATTCAGACACTTACCAGCAAGC
TCCAAGAATTGCAAGAAATGAAGAAAGAAGAGAAAGAGGATTGCCCGGAAGTTCCTCATAAGGCCCAAGA
GCTCCCAGCTCCCACTCCCAGCAGCAGGCACTGCGAGCAAGACTGGCCGCCGGATTCCAGCGAGGAGGGG
CTCCCGCGGCCCCGCTCCCCCTGCTCTGATGGGAGAAGAGACGCCGCGGCCAGAGTCCTGCAGGCCCAGT
GGAAGGTGTACAAGCACAAGAAAAAAAAGGCTGTTCTGGATGAGGCGGCTGTGGTGCTTCAGGCAGCTTT
CAGGGGACATCTCACGCGGACAAAGCTCTTAGCAAGCAAAGCACATGGCTCAGAGCCACCCAGCGTGCCA
GGCCTCCCAGACCAGAGCTCTCCTGTGCCCCGCGTTCCGAGCCCCATCGCCCAGGCCACGGGCAGCCCTG
TGCAGGAGGAGGCCATCGTCATCATCCAGTCCGCTCTGCGGGCACACCTGGCCCGGGCCAGGCACAGTGC
TACCGGTAAAAGAACCACCACCGCAGCTTCTACCAGGAGGAGATCGGCTTCAGCCACACACGGGGACGCC
TCCTCCCCACCCTTCCTCGCAGCTCTTCCTGGTAATTTCATTCATTTGGATTCTGGCACCAGGGCAGCTG
GTCTGCTGAGGTCTCAGCCAAAGAGTGGCCACCTCCAGGAAGCCCGGGCTGTGTCGGGACGGAAGGGAGG
AGTGTCCCATCTGGAGCTGCCTCTGAACTAA

Translation (686 aa):
MFLGTGEPALDTKAKRKAFHKPPPTSPKSPYLSKPRKVASWRSLRTAGSMPLGGRASLTPQKLWLGTAKP
GSLTQALNSPLTWEHAWTGVPGGTPDCLTDTFRVKRPHLRRSASNGHVPGTPVYREKEDMYDEIIELKKS
LHVQKSDVDLMRTKLRRLEEENSRKDRQIEQLLDPSRGTDFVRTLAEKRPDASWVINGLKQRILKLEQQC
KEKDGTISKLQTDMKTTNLEEMRIAMETYYEEVHRLQTLLASSETTGKKPLGEKKTGAKRQKKMGSALLS
LSRSVQELTEENQSLKEDLDRVLSTSPTISKTQGYVEWSKPRLLRRIVELEKKLSVMESSKSHAAEPVRS
HPPACLASSSALHRQPRGDRNKDHERLRGAVRDLKEERTALQEQLLQRDLEVKQLLQAKADLEKELECAR
EGEEERREREEVLREEIQTLTSKLQELQEMKKEEKEDCPEVPHKAQELPAPTPSSRHCEQDWPPDSSEEG
LPRPRSPCSDGRRDAAARVLQAQWKVYKHKKKKAVLDEAAVVLQAAFRGHLTRTKLLASKAHGSEPPSVP
GLPDQSSPVPRVPSPIAQATGSPVQEEAIVIIQSALRAHLARARHSATGKRTTTAASTRRRSASATHGDA
SSPPFLAALPGNFIHLDSGTRAAGLLRSQPKSGHLQEARAVSGRKGGVSHLELPLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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