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Report for CCDS47367.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47367.1 Public Homo sapiens 6 CAGE1 24 110 108 CCDS HistoryNCBI Gene:285782Re-query CCDS DB by CCDS ID:47367.1Re-query CCDS DB by GeneID:285782See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47367.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296742.11 ENSP00000296742.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000296742.11Link to Ensembl Protein Viewer:ENSP00000296742.7Re-query CCDS DB by Nucleotide ID:ENST00000296742Re-query CCDS DB by Protein ID:ENSP00000296742
Original member Current member NCBI NM_205864.3 NP_995586.1 Accepted alive Link to Nucleotide Sequence:NM_205864.3Link to Protein Sequence:NP_995586.1Re-query CCDS DB by Nucleotide ID:NM_205864Re-query CCDS DB by Protein ID:NP_995586Link to BLAST:NP_995586.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_995586.1 641 Q8TC20-2 641 100% 0 0

Chromosomal Locations for CCDS 47367.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 7326858 7326899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7329849 7329888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7334022 7334090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7355041 7355111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7365468 7365575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7368688 7368798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7369919 7370065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7373073 7374131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7378617 7378895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGACAGAGAAGCCAGAATTTCAAAGTCAAGTGTATAATTATGCAAAAGACAACAATATAAAGCAAGACT
CATTTAAGGAAGAAAATCCAATGGAAACTAGTGTTTCTGCAAATACAGACCAACTTGGTAACGAGTATTT
TAGACAGCCTCCTCCTAGAAGCCCGCCTCTAATCCACTGCAGTGGAGAGATGCTGAAATTTACAGAAAAG
TCACTGGCTAAAAGTATTGCCAAGGAATCTGCCCTCAACCCTAGCCAACCTCCAAGCTTCTTATGTAAGA
CTGCAGTTCCTTCAAAAGAAATACAGAATTATGGGGAGATTCCTGAGATGTCAGTCAGTTATGAAAAGGA
AGTCACAGCAGAGGGTGTGGAGAGGCCAGAAATTGTCTCAACTTGGTCTTCGGCAGGCATTTCCTGGAGG
AGTGAAGCATGTCGGGAGAACTGTGAGATGCCTGACTGGGAGCAAAGTGCTGAAAGCTTACAACCTGTTC
AAGAGGACATGGCTTTAAATGAAGTCTTGCAGAAATTAAAACATACTAACAGAAAGCAGGAAGTGCGAAT
CCAAGAACTCCAGTGTAGTAACCTGTATTTAGAGAAGAGGGTTAAAGAACTACAGATGAAGATTACCAAA
CAGCAAGTGTTCATTGATGTCATCAATAAGCTAAAGGAGAATGTTGAAGAATTAATTGAAGACAAATACA
AAATAATCCTAGAGAAGAATGATACTAAAAAGACATTGCAGAATTTGGAAGAGGTTTTAGCTAACACGCA
AAAACATCTTCAGGAATCCAGGAATGACAAGGAAATGTTACAGCTTCAATTTAAGAAGATCAAGGCTAAT
TATGTGTGTTTACAGGAAAGGTACATGACTGAAATGCAACAAAAAAATAAATCTGTAAGTCAGTATTTAG
AGATGGACAAAACCTTAAGCAAGAAAGAAGAAGAGGTAGAGAGACTACAACAACTCAAAAAAGAACTGGA
AAAGGCCACAGCTTCTGCTTTGGACTTGTTGAAACGGGAAAAAGAGGCCCAAGAACAAGAGTTCTTGTCT
TTACAGGAGGAATTCCAGAAACTTGAAAAGGAAAACCTGGAAGAAAGACAGAAACTGAAATCTAGACTTG
AGAAATTGCTCACTCAAGTTAGAAATTTGCAATTTATGTCTGAAAATGAAAGAACGAAGAATATAAAACT
TCAGCAGCAAATCAACGAAGTAAAAAATGAGAATGCAAAACTTAAACAGCAGGTTGCAAGGAGTGAAGAG
CAAAATTATGTCCCTAAATTTGAGACAGCTCAGTTAAAGGATCAATTAGAGGAAGTCTTGAAGTCAGATA
TTACCAAGGATACAAAAACGACACATTCTAATCTGCTCCCGGATTGCTCACCTTGTGAAGAGAGGCTGAA
TCCTGCAGATATAAAAAGAGCTTCTCAGCTGGCCTCCAAAATGCACAGTCTTCTGGCTCTGATGGTGGGA
CTTCTCACATGCCAGGACATCATCAATTCTGATGCTGAACATTTCAAAGAGAGTGAGAAGGTTAGTGATA
TAATGCTGCAAAAACTGAAGAGCCTCCATCTTAAAAAGAAAACTTTAGATAAAGAGGTCATAGACTGTGA
TTCAGATGAAGCCAAGAGTATCAGAGATGTACCTACCCTTCTGGGAGCCAAACTGGATAAGTACCACAGT
CTAAATGAGGAGCTTGATTTCTTGGTTACATCATATGAAGAAATCATTGAATGTGCTGACCAAAGGCTTG
CAATATCCCACTCCCAGATTGCACATTTGGAAGAGAGAAATAAACATTTAGAGGATTTAATTAGAAAGCC
CAGAGAAAAAGCCAGAAAACCAAGATCAAAAAGCTTAGAAAATCATCCGAAGTCCATGACCATGATGCCA
GCTCTTTTTAAAGAAAATAGAAATGATTTAGATTAA

Translation (641 aa):
MTEKPEFQSQVYNYAKDNNIKQDSFKEENPMETSVSANTDQLGNEYFRQPPPRSPPLIHCSGEMLKFTEK
SLAKSIAKESALNPSQPPSFLCKTAVPSKEIQNYGEIPEMSVSYEKEVTAEGVERPEIVSTWSSAGISWR
SEACRENCEMPDWEQSAESLQPVQEDMALNEVLQKLKHTNRKQEVRIQELQCSNLYLEKRVKELQMKITK
QQVFIDVINKLKENVEELIEDKYKIILEKNDTKKTLQNLEEVLANTQKHLQESRNDKEMLQLQFKKIKAN
YVCLQERYMTEMQQKNKSVSQYLEMDKTLSKKEEEVERLQQLKKELEKATASALDLLKREKEAQEQEFLS
LQEEFQKLEKENLEERQKLKSRLEKLLTQVRNLQFMSENERTKNIKLQQQINEVKNENAKLKQQVARSEE
QNYVPKFETAQLKDQLEEVLKSDITKDTKTTHSNLLPDCSPCEERLNPADIKRASQLASKMHSLLALMVG
LLTCQDIINSDAEHFKESEKVSDIMLQKLKSLHLKKKTLDKEVIDCDSDEAKSIRDVPTLLGAKLDKYHS
LNEELDFLVTSYEEIIECADQRLAISHSQIAHLEERNKHLEDLIRKPREKARKPRSKSLENHPKSMTMMP
ALFKENRNDLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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