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Report for CCDS473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
473.1 Public Homo sapiens 1 C1orf50 24 110 108 CCDS HistoryNCBI Gene:79078Re-query CCDS DB by CCDS ID:473.1Re-query CCDS DB by GeneID:79078See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 473.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372525.7 ENSP00000361603.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372525.7Link to Ensembl Protein Viewer:ENSP00000361603.4Re-query CCDS DB by Nucleotide ID:ENST00000372525Re-query CCDS DB by Protein ID:ENSP00000361603
Original member Current member NCBI NM_024097.4 NP_077002.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024097.4Link to Protein Sequence:NP_077002.2Re-query CCDS DB by Nucleotide ID:NM_024097Re-query CCDS DB by Protein ID:NP_077002Link to BLAST:NP_077002.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077002.2 199 Q9BV19 199 100% 0 0

Chromosomal Locations for CCDS 473.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 42767312 42767390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42767509 42767624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42773563 42773649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42774737 42774868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42775209 42775394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGGAGGACGCCGCCGCGCCGGGGCGGACCGAGGGGGTCCTTGAAAGGCAAGGAGCGCCGCCAGCTGCAG
GCCAGGGAGGAGCCCTGGTGGAGCTCACCCCGACCCCCGGCGGCCTGGCCCTGGTGAGCCCCTACCACAC
CCACCGGGCCGGGGACCCCTTAGACCTCGTGGCGCTCGCAGAGCAGGTGCAGAAGGCTGATGAATTCATC
CGAGCAAATGCCACCAACAAGCTGACAGTCATAGCTGAGCAAATCCAACATTTGCAAGAACAAGCCAGGA
AGGTACTGGAAGATGCTCACAGAGATGCCAACCTGCACCATGTAGCTTGTAATATAGTGAAAAAACCTGG
CAACATTTACTATCTCTATAAACGGGAGAGTGGTCAGCAGTATTTTTCCATCATTTCTCCAAAGGAATGG
GGGACAAGTTGTCCACATGACTTCCTTGGTGCCTACAAACTACAGCATGACTTGTCCTGGACTCCGTATG
AGGACATTGAGAAGCAAGATGCTAAAATCAGCATGATGGACACGTTGCTAAGCCAGTCAGTGGCCCTGCC
TCCGTGCACTGAACCCAACTTCCAGGGACTGACTCACTGA

Translation (199 aa):
MEDAAAPGRTEGVLERQGAPPAAGQGGALVELTPTPGGLALVSPYHTHRAGDPLDLVALAEQVQKADEFI
RANATNKLTVIAEQIQHLQEQARKVLEDAHRDANLHHVACNIVKKPGNIYYLYKRESGQQYFSIISPKEW
GTSCPHDFLGAYKLQHDLSWTPYEDIEKQDAKISMMDTLLSQSVALPPCTEPNFQGLTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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