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Report for CCDS47269.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47269.1 Public Homo sapiens 5 FAM13B 24 110 108 CCDS HistoryNCBI Gene:51306Re-query CCDS DB by CCDS ID:47269.1Re-query CCDS DB by GeneID:51306See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47269.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000420893.6 ENSP00000388521.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420893.6Link to Ensembl Protein Viewer:ENSP00000388521.2Re-query CCDS DB by Nucleotide ID:ENST00000420893Re-query CCDS DB by Protein ID:ENSP00000388521
Original member Current member NCBI NM_001101800.3 NP_001095270.1 Accepted alive Link to Nucleotide Sequence:NM_001101800.3Link to Protein Sequence:NP_001095270.1Re-query CCDS DB by Nucleotide ID:NM_001101800Re-query CCDS DB by Protein ID:NP_001095270Link to BLAST:NP_001095270.1
Original member Current member NCBI NM_001385867.1 NP_001372796.1 Accepted alive Link to Nucleotide Sequence:NM_001385867.1Link to Protein Sequence:NP_001372796.1Re-query CCDS DB by Nucleotide ID:NM_001385867Re-query CCDS DB by Protein ID:NP_001372796Link to BLAST:NP_001372796.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001095270.1 887 Q9NYF5-2 887 100% 0 0
NP_001372796.1 887 Q9NYF5-2 887 100% 0 0

Chromosomal Locations for CCDS 47269.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137940225 137940348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137941944 137942045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137942875 137943038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137943133 137943216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137945902 137945997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137948955 137949184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137952628 137952709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137953336 137953465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137954166 137954376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137959616 137959763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137960166 137960214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137962405 137962469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137985257 137985389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137987461 137987616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137988274 137988315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138006990 138007147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138011008 138011149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138011768 138011945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138018302 138018514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138018955 138019111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2664 nt):
ATGAGGAAGAGCTCCTCCCCTTCCTTGAGTAACTGCAACTCCGTTCTTGCTAACAAAATATTTGGAATTC
CACTTGATGAGCTGCAGCAGGGAGGACATCCAGACAATGAGGTTCCATTCATAGTCCGCCACGTTGTGGA
CTATATTGAGGAACATGGAGGTCTGGAGCAACAAGGACTTTTTCAAGTCAATGGAAATGCTGAGACAGTG
GAGTGGCTTCGGCAGAGATACGACAGCGGAGAAGAGGTGGATTTGGTTAAGGAAGCAGATGTTCCCTCAG
CTATTAGCCTTCTTAGATTTTTTCTTCAAGAACTTCCTGAACCTGTTATCCCTGGCAGTTTACATATTCA
CTTGATGCAGCTTTCTCAAGATTATAATAATGAAGATGAATTTGGAAGAAAGTTGAGGTTCCTCTTGCAA
CAGCTTCCACCTGTTAATTATAGTTTGTTAAAGTTTCTGTGTAGATTTTTAGCCAATGTAGCATCACATC
ATGAAGAAATTTGGTCCGCAAATTCTTTGGCTGCTGTCTTTGGTCCAGATGTCTTCCACATTTACACAGA
TGTGGAAGACATGAAAGAGCAAGAAATAGTGAGCAGGATAATGGCTGGACTTCTGGAAAACTACTATGAG
TTTTTTGAGAATGAAGAGGAAGATTTTTCATCTAATGATTTGAGTTCAATTACTGAACAGGTTAATGAAC
TTTCTGAGGAAGAAGAGGAAGATGAAAAGCTGGAACATATTGAAGAACTTCCAGAAGAGGGTGCAGAAAA
ATCAAATGACATGCCAGAGGTGGTACAATTAAGGATGACTGAAAACATCCTGGAATCAAATAGTGTTACG
GCAACAAGCACCCATATATCTCCCATCAGCATCCTACCAGCCTCTACAGATATTTTAGAAAGAACAATTA
GAGCAGCTGTGGAACAGCACCTTTTTGATCTTCAGAGCAGCATAGATCATGATCTTAAGAATTTACAACA
GCAAAGTGTGGTGTGTAATAATGAAGCAGAAAGTATTCATTGTGATGGGGAAGGATCTAATAACCAGATT
GATATTGCTGATGATATTATTAATGCCAGTGAAAGTAACAGAGACTGTTCAAAACCTGTGGCTAGCACTA
ATTTAGACAATGAAGCTATGCAGCAAGATTGTGTATTTGAGAATGAAGAAAATACCCAGTCTGTAGGTAT
ATTGTTAGAGCCATGCAGTGACCGTGGTGATAGTGAAGATGGCTGTCTTGAGAGGGAAGAATATTTGTTA
TTTGACAGTGATAAATTGTCACACTTGATTCTGGATTCTAGTAGCAAGATATGTGATTTGAATGCCAACA
CTGAATCAGAAGTACCAGGAGGTCAGAGTGTTGGTGTTCAAGGGGAAGCAGCGTGTGTCAGTATTCCACA
TTTAGATCTGAAGAATGTTTCTGATGGTGATAAATGGGAAGAGCCATTTCCTGCTTTTAAGTCTTGGCAG
GAGGACTCTGAGTCTGGAGAAGCTCAGCTGTCTCCACAAGCTGGAAGAATGAATCATCACCCCTTGGAAG
AGGACTGTCCTCCAGTATTATCACACCGCAGTTTAGATTTTGGTCAAAGCCAGCGTTTCCTACATGATCC
AGAAAAGTTGGATTCCTCATCTAAAGCACTGTCTTTTACTAGAATTCGAAGATCATCCTTTAGTTCAAAA
GATGAAAAGAGAGAGGACAGAACACCTTATCAGCTGGTCAAGAAACTTCAGAAGAAAATCAGACAATTTG
AGGAACAGTTTGAAAGGGAAAGAAATAGCAAGCCCTCCTACAGTGATATTGCTGCCAATCCAAAGGTATT
AAAATGGATGACAGAGCTTACAAAACTGCGGAAGCAAATTAAAGATGCAAAACACAAAAATTCTGATGGA
GAATTTGTACCTCAGACACGTCCACGTAGTAACACACTTCCAAAAAGCTTTGGCTCTTCTCTAGACCATG
AAGATGAAGAGAATGAAGATGAACCCAAGGTCATTCAGAAGGAGAAAAAACCATCTAAAGAAGCAACCCT
TGAACTTATTCTTAAAAGACTGAAAGAAAAACGTATTGAGAGGTGTCTTCCAGAAGATATCAAGGTGACC
AAGGAAGAAAGGCACATTGTTAAACCTCTCTATGATAGATACAGGCTTGTAAAACAAATGCTGACAAGAG
CTAGCATCACTCCTGTCCTTGGATCTCCATCCACCAAGCGAAGGGGTCAGATGTTACAGCCAATCATAGA
AGGAGAAACTGCACATTTTTTTGAAGAAATCAAGGAGGAAGAAGAAGATGGTGTTAATCTGTCCTCTGAG
TTAGGTGATATGTTGAAAACTGCAGTACAGGTACAGTCTTCATTAGAAAACTCTGAATCTGATGTTGAAG
AAAATCAAGAAAAACTGGCTCTGGATCTCCGATTGTCAAGTTCTCGAGCAGCTTCTATGCCTGAATTATT
GGAACAACTTTGGAAAGCCAGAGCTGAAAAAAAGAAACTACGCAAAACGTTGCGGGAATTTGAAGAAGCA
TTTTATCAACAAAATGGAAGGAATGCCCAGAAAGAGGATCGTGTTCCAGTGCTTGAGGAGTACAGAGAGT
ACAAGAAAATTAAAGCCAAGCTTAGGCTTCTTGAAGTTCTTATAAGCAAACAAGATTCTTCAAAATCCAT
ATAA

Translation (887 aa):
MRKSSSPSLSNCNSVLANKIFGIPLDELQQGGHPDNEVPFIVRHVVDYIEEHGGLEQQGLFQVNGNAETV
EWLRQRYDSGEEVDLVKEADVPSAISLLRFFLQELPEPVIPGSLHIHLMQLSQDYNNEDEFGRKLRFLLQ
QLPPVNYSLLKFLCRFLANVASHHEEIWSANSLAAVFGPDVFHIYTDVEDMKEQEIVSRIMAGLLENYYE
FFENEEEDFSSNDLSSITEQVNELSEEEEEDEKLEHIEELPEEGAEKSNDMPEVVQLRMTENILESNSVT
ATSTHISPISILPASTDILERTIRAAVEQHLFDLQSSIDHDLKNLQQQSVVCNNEAESIHCDGEGSNNQI
DIADDIINASESNRDCSKPVASTNLDNEAMQQDCVFENEENTQSVGILLEPCSDRGDSEDGCLEREEYLL
FDSDKLSHLILDSSSKICDLNANTESEVPGGQSVGVQGEAACVSIPHLDLKNVSDGDKWEEPFPAFKSWQ
EDSESGEAQLSPQAGRMNHHPLEEDCPPVLSHRSLDFGQSQRFLHDPEKLDSSSKALSFTRIRRSSFSSK
DEKREDRTPYQLVKKLQKKIRQFEEQFERERNSKPSYSDIAANPKVLKWMTELTKLRKQIKDAKHKNSDG
EFVPQTRPRSNTLPKSFGSSLDHEDEENEDEPKVIQKEKKPSKEATLELILKRLKEKRIERCLPEDIKVT
KEERHIVKPLYDRYRLVKQMLTRASITPVLGSPSTKRRGQMLQPIIEGETAHFFEEIKEEEEDGVNLSSE
LGDMLKTAVQVQSSLENSESDVEENQEKLALDLRLSSSRAASMPELLEQLWKARAEKKKLRKTLREFEEA
FYQQNGRNAQKEDRVPVLEEYREYKKIKAKLRLLEVLISKQDSSKSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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