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Report for CCDS46856.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46856.2 Public Homo sapiens 3 ASB14 24 110 108 CCDS HistoryNCBI Gene:142686Re-query CCDS DB by CCDS ID:46856.2Re-query CCDS DB by GeneID:142686See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 46856.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data. The update adds an ankyrin repeat (Pfam) and completes another in the protein. This update is supported by AL832472.1, which contains a non-canonical splice donor-acceptor pair (either GT-TA or TT-AG depending on alignment method) at the exon 3-4 splice junction. The non-canonical donor-acceptor pair is supported by homologous transcripts in cow, macaque, mouse and rat.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46856.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000487349.6 ENSP00000419199.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000487349.6Link to Ensembl Protein Viewer:ENSP00000419199.1Re-query CCDS DB by Nucleotide ID:ENST00000487349Re-query CCDS DB by Protein ID:ENSP00000419199
Original member Current member NCBI NM_001142733.3 NP_001136205.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001142733.3Link to Protein Sequence:NP_001136205.2Re-query CCDS DB by Nucleotide ID:NM_001142733Re-query CCDS DB by Protein ID:NP_001136205Link to BLAST:NP_001136205.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136205.2 587 A6NK59-3 587 100% 0 0

Chromosomal Locations for CCDS 46856.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 57276550 57276728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57277767 57277920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57278377 57278920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57280302 57280473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57283194 57283439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57287901 57288059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57288155 57288286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57289068 57289123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57291912 57292033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1764 nt):
ATGGATAATTACACCAGCGATGAAGACATAGATGAAGACTTTGACACCCAGCTCATCATTCAACAGAGTT
TGCAGGATATTTATAAGCCAGGAACAGCACAACATGCACCTAAGGATGAGAGTTTGCATTCCTTTTTGAG
CGCTGACTATAAGAAGATAGTTGAAACAATAGAGAAAGGTAAGGAAGATGCATTGTCACACTTAACCAAG
TACCATTCCGCATTTGGTGAAGCAGATGAGATAGGCTGGATTCCTCTGCATAAGGCTGCAGTGCAATTAA
ATAGGAAAATTTTGGAAATAACCCTAAGCGCTTCAGACCCCAGTCTGTGGGAGCAAACCACTCACAATGG
TGAAACGCCACTTTTTTTGGCTGTCAGCAGTTGCCTCTTAGAAAATGCCACTTTTCTTCTTCTCAATGGC
TGCAATCCAAATGCTAAGAATTTCGAAGGCAATTCTCCTCTTCTTGCAGCTGTGCTGCGTGACTGCTATG
ACATGGCTGCCTTGCTGATCAACTATGGAGCAGATGTCAATCTGCGTTGTGCCAACGAGAGGACAGCTCT
CCACGAAGCAGCCAAACTGGGCAGAGAGGACATGGTGAAGCTTATGCTGGTTTCTGGGGCACACCCTGAC
CCACAGAGCACGTATGGATTCACTCCTCTTGCTCTTGCTGCCCAAAGTGGACACACTGAAATCATGGAAA
TGTTACTGCGGAAAGGAGCTAATGCTCATGGTCAGGCCTCTGATTCTTCTTCCATCTTACTTGAAGCCGC
AAGTGGAGGAAATCCAGATGCTGTGGCTCTCTTGCTGGAGTATGGAGCTGATGCCAACATCCCTAAGAAT
TCAGGCCACCTGCCCATCCATGTGGCAGCTGACAGGGGCCACTTACTAGCTCTAAAGATACTGATTCCAG
TTACGGATCTTGCTGCCATTAAGCAGAGTGGGATCAGTCCAGTTCACTGTGCAGCAGCAGGAGCACATCC
TCAGTGCCTGGAACTCCTCATCCAGGCTGGATTTGATGTGAACTTCATGCTGGATCAGAGAATTAACAAA
CACTACGATGACCACAGGAAGTCAGCTTTGTATTTTGCTGTATCAAACAGTGACCTCTCTTCAGTCAAGC
TGCTTCTGAGTGCTGGAGCTCTGCCTAATCAAGACCCGGTTAACTGCCTCCAGATAGCCCTCAGGATGGG
CAACTATGAGCTGATCAGTCTGCTGCTAAGGCATGGGGCCAATGTCAATTACTTCTGCAGAGTTAACCCT
TTACATTTCCCATCAGCACTGCAATACACTCTGAAAGATGAAGTCATGCTCAGGATGCTGCTGAACTATG
GGTATGACACAGAGCGATGTTTTGATTGCCCACATGGAGACAAAGTCCATCCTTCCTATACTGTTGAAGG
CTGGACATCTACAGTTATCAAAGATACTAAGTTCTGTGAAGTAATAACTTTGTCATGGCTGCAACATCTC
TCTGGAAAGGTTGTTCGAGTGATGCTTGATTATGTTGATCAAGTTCGGATCTGTTCAAAGTTGAAAGCTG
TGCTCCAAAAACAGGGGATCTGGTCAGAAATACATTTTATCTTAACAAACCCTCGCTCCCTAAAACATTT
GTGCCGCCTAAAGATCCGGAAATGCATGGGACGGTTACATTTGCGCTGCCCTGTCTTCATGTCATTTCTT
CCATTACCCAATCGTCTAAAAGCATATGTCCTTTACAAAGAATACGACCTTTATGGACAAGGAATTTTTA
CAGGAACCTGGTAA

Translation (587 aa):
MDNYTSDEDIDEDFDTQLIIQQSLQDIYKPGTAQHAPKDESLHSFLSADYKKIVETIEKGKEDALSHLTK
YHSAFGEADEIGWIPLHKAAVQLNRKILEITLSASDPSLWEQTTHNGETPLFLAVSSCLLENATFLLLNG
CNPNAKNFEGNSPLLAAVLRDCYDMAALLINYGADVNLRCANERTALHEAAKLGREDMVKLMLVSGAHPD
PQSTYGFTPLALAAQSGHTEIMEMLLRKGANAHGQASDSSSILLEAASGGNPDAVALLLEYGADANIPKN
SGHLPIHVAADRGHLLALKILIPVTDLAAIKQSGISPVHCAAAGAHPQCLELLIQAGFDVNFMLDQRINK
HYDDHRKSALYFAVSNSDLSSVKLLLSAGALPNQDPVNCLQIALRMGNYELISLLLRHGANVNYFCRVNP
LHFPSALQYTLKDEVMLRMLLNYGYDTERCFDCPHGDKVHPSYTVEGWTSTVIKDTKFCEVITLSWLQHL
SGKVVRVMLDYVDQVRICSKLKAVLQKQGIWSEIHFILTNPRSLKHLCRLKIRKCMGRLHLRCPVFMSFL
PLPNRLKAYVLYKEYDLYGQGIFTGTW


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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