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Report for CCDS46852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46852.1 Public Homo sapiens 3 CCDC66 24 110 108 CCDS HistoryNCBI Gene:285331Re-query CCDS DB by CCDS ID:46852.1Re-query CCDS DB by GeneID:285331See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46852.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394672.8 ENSP00000378167.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394672.8Link to Ensembl Protein Viewer:ENSP00000378167.3Re-query CCDS DB by Nucleotide ID:ENST00000394672Re-query CCDS DB by Protein ID:ENSP00000378167
Original member Current member NCBI NM_001141947.3 NP_001135419.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001141947.3Link to Protein Sequence:NP_001135419.1Re-query CCDS DB by Nucleotide ID:NM_001141947Re-query CCDS DB by Protein ID:NP_001135419Link to BLAST:NP_001135419.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135419.1 948 A2RUB6-1 948 100% 0 0

Chromosomal Locations for CCDS 46852.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 56557243 56557253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56558846 56558910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56559569 56559594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56563684 56564125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56566594 56566759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56566950 56567053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56571181 56571302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56592970 56593101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56593491 56593741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56593944 56594028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56613589 56613750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56615128 56615272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56615922 56616053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56617112 56617605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56618172 56618212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56619271 56619527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56619777 56619901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 56621532 56621618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2847 nt):
ATGAACTTGGGAGATGGTTTAAAGCTTGAAACTGAATTACTGGATGGAAAAACCAAGCTAATATTGTCTC
CA
TATGAACATAAATCAAAAATTTCTGTGAAGATGGGAAATAAGGCCAAGATTGCAAAATGTCCTTTAAG
A
ACAAAAACTGGGCACATTCTAAAATCAACACAAGATACTTGTATTGGGAGTGAAAAACTTTTGCAAAAG
AAG
CCAGTTGGTTCAGAAACATCACAGGCAAAAGGTGAAAAAAATGGAATGACTTTTTCATCCACTAAGG
AT
TTATGTAAACAATGTATAGATAAAGACTGTCTTCATATCCAGAAAGAGATTTCACCTGCAACCCCTAA
T
ATGCAGAAGACTAGAAACACCGTAAATACATCTCTAGTAGGTAAACAGAAGCCTCACAAAAAACACATC
ACA
GCTGAAAACATGAAGAGCAGTTTGGTGTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTG
TA
AACCAAGGAAATAGATCTCTTTCCCTGACTGAGAATGGAAAGGAGGCAAAAAGTCAATATAGTCTATA
T
TTAAACAGTATTTCTAATCAGCCAAAGGATGAGAACATTATGGGATTATTCAAAAAAACTGAAATGGTT
TCA
TCTGTCCCAGCTGAAAATAAATCTGTCTTAAATGAACATCAGGAGACATCTAAACAGTGTGAGCAAA
AA
ATTGCCATAGAGAATGAATGGAAACCAGCTGATATATTCAGTACTCTGGGGGAAAGGGAATGTGATAG
A
AGTTCGTTGGAAGCAAAAAAAGCCCAGTGGAGGAAAGAGCTAGATGAACAGGTTGCTTTAAAGAAGAAA
GAA
AAAGAAGTTTCTGAAAAATGGAATGATCCTTGGAAAAAATCTGAAAGTGATAAAATAATATGGGAAA
AA
CATCAAATTCTTGACCAATCTAGGGAAACAGTACTGCTGGAGCACCCTTTCAGTGCTGTGAAACAAGA
A
CTGCAAAGAAAATGGATTGAAGAGTTGAATAAGCAAATAGAAGATGACCGTCAAAGAAAAATAGAGGAA
AAA
ATTATATATTCAAAGGGTGAGGAACATGACAGATGGGCAATGCACTTTGATTCATTAAAGAGTTATC
CT
GGTTCTCAATCTCAGCTGTTCTCTCAGTCAACACACAAACAACCTGAGTACTTCTGTGTCTCTCCTGA
C
ACTCAGGAGCTGGCTGATGTCAGCAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAACCTTCAGAG
GAG
GAGCATATAGCAAAACCTATTAAGGATGTGGTTATGGCAAACAGTAAGAAAACAAACTTTCTCCGTT
CT
ATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAAAACAATTAGAGCA
T
CAGAAAGCCATCACTGCCCAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGGAGGAAGAGCAAAGAAAG
AAG
GAAGAACAAGAAGAGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGAAG
AC
ATACTTAAGCAAAAACAAAAGGAAGAAATCATGACTCTCAAGACAAATGAGCTATTCCAGACAATGCA
G
CGAGCACAGGAACTGGCACAGAGACTAAAACAAGAACAAAGAATCCGAGAATTGGCGCAAAAGGGACAT
GAC
ACTTCTAGACTGATTAAAAATCTTGGTGTTGATACAATACAAATGGAATATAATGCATCTAACATTT
CA
AATTCAAGACATGATTCTGATGAAATCAGTGGTAAAATGAATACATATATGAATTCTACGACTTCTAA
G
AAGGATACTGGTGTGCAAACAGATGACTTAAATATAGGAATATTCACCAATGCAGAATCACATTGTGGA
TCA
TTAATGGAGAGGGACATCACAAATTGTTCATCTCCTGAGATTTCGGCAGAACTTATTGGACAGTTTA
GC
ACCAAGAAAAACAAGCAAGAACTAACTCAGGATAAAGGAGCCAGCTTAGAAAAAGAAAACAATCGGTG
T
AATGACCAGTGTAATCAGTTCACAAGAATAGAGAAACAAACAAAACACATGAAGAAATATCCTAAAAGG
CCT
GATTGGAATATAAATAAGCCACCTAAAAGGTATATTCCAGCATCAGAAAAGTACCCTAAACAGCTTC
AA
AAGCAGAGAGAAGAAAAAAAAGTAAGGAGGCAGATGGAATTGCTTCATTTGGTAGAAAAAAATAATCC
T
GGGCACCTCTCTCAAAACAGAGGCATTTCACCAGAAATTTTTCATTCATCTCATCAAGAAACGGAGTCA
AAG
TTGAGGTGGCATCTAGTCAAAAAGGAAGAAGAGCCTCTGAATATTCATTCATTCAGCAAGGAAAGGT
CT
CCATCATCACCAGTTCCAGTAGTGAAAAACAGAACCCAACAAACTCAAAATACATTACATTTACCACT
A
AAAAACAGTAGCTATGAGAGAGAGAATTTGATCTCAGGAAGTAATCAAACAGAATTATCATCTGGGATT
TCT
GAATCATCCCATTTTATTCCGTATGTTCGAACAAATGAGATCTATTACCTTGATCCCGATGCACCAT
TG
TCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAGACTGTGGCCAAAAACGACAGCTATT
T
GATTCTGACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGACAGCAAGCA
ATC
CTTAAGGGACTTTCAGAACTGAGACAGGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAGTAGTCTCC
TG
CCTTTAGCTGAAAATCAAGAAGAGAGTTTTGGTTCTTCATTTTAA


Translation (948 aa):
MNLGDGLKLETELLDGKTKLILSPYEHKSKISVKMGNKAKIAKCPLRTKTGHILKSTQDTCIGSEKLLQK
K
PVGSETSQAKGEKNGMTFSSTKDLCKQCIDKDCLHIQKEISPATPNMQKTRNTVNTSLVGKQKPHKKHI
T
AENMKSSLVCLTQDQLQQILMTVNQGNRSLSLTENGKEAK
SQYSLYLNSISNQPKDENIMGLFKKTEMV
S
SVPAENKSVLNEHQETSKQCEQKIA
IENEWKPADIFSTLGERECDRSSLEAKKAQWRKELDEQVALKKK
E
KEVSEKWNDPWKKSESDKIIWEKHQILDQSR
ETVLLEHPFSAVKQELQRKWIEELNKQIEDDRQRKIEE
K
IIYSK
GEEHDRWAMHFDSLKSYPGSQSQLFSQSTHKQPEYFCVSPDTQELADVSSVCTPTTGSQVEPSE
E
EHIAKPIKDVVMANSKKT
NFLRSMTALLDPAQIEERDRRRQKQLEHQKAITAQVEEKRRKKQLEEEQRK
K
EEQEEELRLAQEREEMQKQYEEDILKQKQKE
EIMTLKTNELFQTMQRAQELAQRLKQEQRIRELAQKGH
D
TSRLIKNLG
VDTIQMEYNASNISNSRHDSDEISGKMNTYMNSTTSKKDTGVQTDDLNIGIFTNAESHCG
S
LMERDITNCSSPEISAELIGQFSTKKNKQELTQDKGASLEKENNRCNDQCNQFTRIEKQTKHMKKYPKR
P
DWNINKPPKRYIPASEKYPKQLQKQREEKKVRRQMELLHLVEKNNPGHLSQNRGISPEIFHSSHQETES
K
LRWHLVKK
EEEPLNIHSFSKERSPSSPVPVVKNRTQQTQNTLHLPLKNSSYERENLISGSNQTELSSGI
S
ESSHFIPYVRTNEIYYLDPDAPLSGPSTQDPQYQNSQ
DCGQKRQLFDSDCVRDPLLNPNMVKNRDRQQA
I
LKGLSELRQ
GLLQKQKELESSLLPLAENQEESFGSSF



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser