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Report for CCDS46841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46841.1 Public Homo sapiens 3 GLYCTK 24 110 108 CCDS HistoryNCBI Gene:132158Re-query CCDS DB by CCDS ID:46841.1Re-query CCDS DB by GeneID:132158See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46841.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305690.12 ENSP00000301965.9 Accepted alive Link to Ensembl Transcript Viewer:ENST00000305690.12Link to Ensembl Protein Viewer:ENSP00000301965.9Re-query CCDS DB by Nucleotide ID:ENST00000305690Re-query CCDS DB by Protein ID:ENSP00000301965
Original member Current member EBI ENST00000477382.1 ENSP00000419008.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000477382.1Link to Ensembl Protein Viewer:ENSP00000419008.1Re-query CCDS DB by Nucleotide ID:ENST00000477382Re-query CCDS DB by Protein ID:ENSP00000419008
Original member Current member NCBI NM_001144951.2 NP_001138423.1 Accepted alive Link to Nucleotide Sequence:NM_001144951.2Link to Protein Sequence:NP_001138423.1Re-query CCDS DB by Nucleotide ID:NM_001144951Re-query CCDS DB by Protein ID:NP_001138423Link to BLAST:NP_001138423.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138423.1 234 Q8IVS8-2 234 100% 0 0

Chromosomal Locations for CCDS 46841.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52290343 52290719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52290960 52291111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52292260 52292435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGGCTGCAGCCCTGCAGGTCCTGCCCCGCTTGGCCCGAGCCCCCTTGCATCCACTCCTCTGGCGGGGCT
CAGTGGCCCGTCTGGCCAGCAGCATGGCCTTGGCAGAGCAGGCCAGGCAGCTGTTTGAGAGTGCTGTAGG
TGCAGTGCTGCCGGGCCCCATGCTGCACCGGGCACTATCCTTGGACCCTGGTGGCAGACAGCTGAAGGTG
CGGGACCGGAACTTTCAGCTGAGGCAAAACCTCTACCTGGTGGGCTTTGGCAAGGCTGTGCTGGGTATGG
CAGCTGCAGCTGAGGAACTACTGGGCCAGCATCTTGTGCAGGGCGTGATCAGCGTTCCCAAGGGGATCCG
TGCTGCCATGGAGCGTGCCGGCAAGCAGGAGATGCTGCTGAAGCCACATAGCCGTGTCCAGGTATTCGAG
GGTGCGGAGGACAACCTCCCGGACCGCGATGCGCTGCGGGCTGCACTGGCCATCCAGCAACTGGCTGAGG
GACTCACAGCTGATGACCTGCTGCTCGTGCTGATCTCAGGTGGTGAGCCTCATCCTGTCAGATGTGGTGG
GGGACCCTGTGGAGGTGATTGCCAGTGGCCCCACCGTGGCCAGTTCCCACAATGTGCAAGATTGCCTGCA
TATCCTCAATCGCTACGGCCTCCGTGCAGCCCTGCCACGTTCTGTGAAGACTGTGCTGTCTCGGGCCGAC
TCTGA

Translation (234 aa):
MAAALQVLPRLARAPLHPLLWRGSVARLASSMALAEQARQLFESAVGAVLPGPMLHRALSLDPGGRQLKV
RDRNFQLRQNLYLVGFGKAVLGMAAAAEELLGQHLVQGVISVPKGIRAAMERAGKQEMLLKPHSRVQVFE
GAEDNLPDRDALRAALAIQQLAEGLTADDLLLVLISGGEPHPVRCGGGPCGGDCQWPHRGQFPQCARLPA
YPQSLRPPCSPATFCEDCAVSGRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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