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Report for CCDS46770.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46770.1 Public Homo sapiens 3 TBC1D5 24 110 108 CCDS HistoryNCBI Gene:9779Re-query CCDS DB by CCDS ID:46770.1Re-query CCDS DB by GeneID:9779See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46770.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000446818.6 ENSP00000402935.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446818.6Link to Ensembl Protein Viewer:ENSP00000402935.2Re-query CCDS DB by Nucleotide ID:ENST00000446818Re-query CCDS DB by Protein ID:ENSP00000402935
Original member Current member EBI ENST00000696125.1 ENSP00000512418.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000696125.1Link to Ensembl Protein Viewer:ENSP00000512418.1Re-query CCDS DB by Nucleotide ID:ENST00000696125Re-query CCDS DB by Protein ID:ENSP00000512418
Original member Current member NCBI NM_001134381.2 NP_001127853.1 Accepted alive Link to Nucleotide Sequence:NM_001134381.2Link to Protein Sequence:NP_001127853.1Re-query CCDS DB by Nucleotide ID:NM_001134381Re-query CCDS DB by Protein ID:NP_001127853Link to BLAST:NP_001127853.1
Original member Current member NCBI NM_001349073.2 NP_001336002.1 Accepted alive Link to Nucleotide Sequence:NM_001349073.2Link to Protein Sequence:NP_001336002.1Re-query CCDS DB by Nucleotide ID:NM_001349073Re-query CCDS DB by Protein ID:NP_001336002Link to BLAST:NP_001336002.1
Original member Current member NCBI NM_001349074.2 NP_001336003.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001349074.2Link to Protein Sequence:NP_001336003.1Re-query CCDS DB by Nucleotide ID:NM_001349074Re-query CCDS DB by Protein ID:NP_001336003Link to BLAST:NP_001336003.1
Original member Current member NCBI NM_001349075.2 NP_001336004.1 Accepted alive Link to Nucleotide Sequence:NM_001349075.2Link to Protein Sequence:NP_001336004.1Re-query CCDS DB by Nucleotide ID:NM_001349075Re-query CCDS DB by Protein ID:NP_001336004Link to BLAST:NP_001336004.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127853.1 817 Q92609-2 817 100% 0 0
NP_001336002.1 817 Q92609-2 817 100% 0 0
NP_001336003.1 817 Q92609-2 817 100% 0 0
NP_001336004.1 817 Q92609-2 817 100% 0 0

Chromosomal Locations for CCDS 46770.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 17160963 17161256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17166767 17166928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17167749 17167828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17185109 17185208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17214207 17214370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17233685 17233750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17238163 17238419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17258506 17258591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17291895 17292001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17307992 17308134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17372075 17372247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17374471 17374540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17374629 17374679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17376525 17376613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17383913 17384015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17403181 17403248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17404694 17404768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17404872 17404961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17406418 17406526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17428450 17428519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 17508474 17508570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2454 nt):
ATGTATCATTCCTTATCTGAAACTAGACATCCTCTGCAGCCAGAAGAACAAGAAGTAGGCATTGACCCCT
TGTCCAGTTACTCTAACAAGTCTGGAGGAGATTCAAATAAAAATGGAAGAAGAACAAGTTCTACTTTAGA
CTCTGAAGGGACTTTTAATTCCTATAGGAAAGAATGGGAAGAACTATTTGTAAACAACAATTACTTGGCA
ACAATAAGGCAGAAGGGGATTAATGGGCAGCTGAGAAGCAGCAGGTTCCGCAGCATTTGCTGGAAGCTAT
TTCTTTGTGTTCTTCCTCAAGACAAAAGTCAATGGATAAGTAGAATTGAAGAATTAAGAGCATGGTATAG
CAACATTAAAGAAATACATATTACCAACCCGAGGAAGGTTGTTGGCCAACAAGATTTGATGATCAATAAT
CCTCTTTCACAGGATGAAGGGAGTCTTTGGAACAAATTCTTCCAAGATAAAGAACTTCGATCAATGATTG
AACAAGATGTCAAAAGAACGTTTCCTGAAATGCAGTTTTTCCAGCAAGAAAATGTGAGAAAAATTCTTAC
AGATGTTCTTTTCTGTTATGCCAGAGAAAACGAGCAGTTGCTTTATAAACAGGGCATGCACGAACTGTTA
GCACCTATAGTCTTTGTCCTTCACTGTGACCACCAAGCTTTTCTACATGCCAGTGAGTCTGCACAGCCCA
GTGAGGAAATGAAAACTGTCTTGAACCCTGAGTATCTGGAACATGATGCCTATGCAGTGTTCTCACAACT
TATGGAAACTGCTGAACCTTGGTTTTCAACTTTTGAGCATGATGGTCAGAAGGGGAAAGAAACACTGATG
ACTCCCATTCCCTTTGCTAGACCACAAGATTTAGGGCCAACAATTGCTATTGTTACTAAAGTCAACCAGA
TCCAGGATCATCTACTGAAGAAGCATGATATTGAGCTTTACATGCACTTGAACAGACTAGAAATTGCACC
ACAGATATATGGGTTAAGGTGGGTGCGGCTGCTATTTGGACGAGAGTTCCCCCTGCAGGACCTTCTGGTG
GTCTGGGATGCCTTGTTTGCAGACGGCCTCAGCCTGGGTTTAGTAGATTATATCTTCGTAGCCATGTTAC
TTTACATCCGAGATGCTTTGATCTCTAGTAACTACCAGACCTGTCTCGGCCTTCTGATGCATTACCCATT
CATCGGGGATGTACACTCACTGATTCTTAAGGCTCTGTTCCTTAGAGATCCAAAGAGAAATCCAAGACCA
GTGACTTATCAATTCCATCCAAATTTAGATTATTACAAAGCACGAGGAGCAGACCTCATGAATAAAAGCC
GGACCAATGCCAAAGGTGCTCCCCTGAATATAAATAAGGTCTCTAATAGCCTGATTAATTTTGGAAGAAA
GTTGATTTCCCCAGCAATGGCTCCAGGCAGTGCAGGTGGCCCTGTACCTGGAGGCAACAGCAGTAGCTCC
TCCTCTGTTGTAATTCCTACCAGGACCTCAGCAGAGGCCCCAAGCCATCACTTGCAACAGCAACAGCAGC
AGCAGAGGCTGATGAAATCAGAAAGCATGCCTGTGCAATTGAACAAAGGCGATGTAGTTACAGGAAGCGA
TGCTCAGGTTTCTGTTCCTGTCCAGACTCTAACTGACCTCCAAGGGCTAAGTTCTAAAAACATCAGTTCA
TCTCCAAGCGTTGAGAGTTTGCCTGGAGGAAGAGAATTCACTGGCTCTCCACCTTCATCTGCTACTAAAA
AAGATTCCTTTTTTAGCAACATCTCACGTTCTCGCTCACACAGCAAAACTATGGGCAGAAAAGAATCTGA
AGAAGAATTAGAAGCCCAAATTTCCTTCCTTCAAGGGCAGTTGAATGACCTGGATGCCATGTGCAAATAC
TGTGCAAAGGTGATGGACACTCATCTTGTAAATATTCAAGATGTGATATTACAAGAAAATTTGGAAAAAG
AAGATCAAATTCTGGTTTCCCTGGCAGGATTAAAACAGATCAAAGACATTCTAAAAGGTTCCCTGCGTTT
TAACCAGAGCCAGCTAGAGGCCGAAGAGAACGAACAGATCACCATTGCGGACAACCACTACTGCTCCAGC
GGCCAGGGCCAGGGCCGAGGCCAAGGCCAGAGCGTTCAAATGTCAGGGGCCATTAAACAGGCCTCTTCAG
AAACGCCAGGGTGCACTGATAGAGGGAATTCCGATGACTTCATCCTGATTTCCAAAGATGATGATGGGAG
CAGTGCCAGGGGCTCCTTCTCCGGCCAGGCCCAGCCTCTTCGCACCCTCAGAAGCACCTCTGGGAAAAGC
CAGGCCCCAGTCTGCTCCCCACTGGTGTTCTCAGATCCACTGATGGGCCCAGCCTCAGCTTCCTCCAGCA
ACCCCAGCTCCAGTCCTGATGACGACAGCAGCAAGGACTCTGGCTTCACCATTGTGAGTCCCCTGGACAT
CTGA

Translation (817 aa):
MYHSLSETRHPLQPEEQEVGIDPLSSYSNKSGGDSNKNGRRTSSTLDSEGTFNSYRKEWEELFVNNNYLA
TIRQKGINGQLRSSRFRSICWKLFLCVLPQDKSQWISRIEELRAWYSNIKEIHITNPRKVVGQQDLMINN
PLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEMQFFQQENVRKILTDVLFCYARENEQLLYKQGMHELL
APIVFVLHCDHQAFLHASESAQPSEEMKTVLNPEYLEHDAYAVFSQLMETAEPWFSTFEHDGQKGKETLM
TPIPFARPQDLGPTIAIVTKVNQIQDHLLKKHDIELYMHLNRLEIAPQIYGLRWVRLLFGREFPLQDLLV
VWDALFADGLSLGLVDYIFVAMLLYIRDALISSNYQTCLGLLMHYPFIGDVHSLILKALFLRDPKRNPRP
VTYQFHPNLDYYKARGADLMNKSRTNAKGAPLNINKVSNSLINFGRKLISPAMAPGSAGGPVPGGNSSSS
SSVVIPTRTSAEAPSHHLQQQQQQQRLMKSESMPVQLNKGDVVTGSDAQVSVPVQTLTDLQGLSSKNISS
SPSVESLPGGREFTGSPPSSATKKDSFFSNISRSRSHSKTMGRKESEEELEAQISFLQGQLNDLDAMCKY
CAKVMDTHLVNIQDVILQENLEKEDQILVSLAGLKQIKDILKGSLRFNQSQLEAEENEQITIADNHYCSS
GQGQGRGQGQSVQMSGAIKQASSETPGCTDRGNSDDFILISKDDDGSSARGSFSGQAQPLRTLRSTSGKS
QAPVCSPLVFSDPLMGPASASSSNPSSSPDDDSSKDSGFTIVSPLDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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