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Report for CCDS46757.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46757.1 Public Homo sapiens 3 TSEN2 24 110 108 CCDS HistoryNCBI Gene:80746Re-query CCDS DB by CCDS ID:46757.1Re-query CCDS DB by GeneID:80746See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46757.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415684.6 ENSP00000416510.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415684.6Link to Ensembl Protein Viewer:ENSP00000416510.1Re-query CCDS DB by Nucleotide ID:ENST00000415684Re-query CCDS DB by Protein ID:ENSP00000416510
Original member Current member EBI ENST00000681471.1 ENSP00000505105.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681471.1Link to Ensembl Protein Viewer:ENSP00000505105.1Re-query CCDS DB by Nucleotide ID:ENST00000681471Re-query CCDS DB by Protein ID:ENSP00000505105
Original member Current member EBI ENST00000679670.1 ENSP00000506080.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679670.1Link to Ensembl Protein Viewer:ENSP00000506080.1Re-query CCDS DB by Nucleotide ID:ENST00000679670Re-query CCDS DB by Protein ID:ENSP00000506080
Original member Current member EBI ENST00000681676.1 ENSP00000506163.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681676.1Link to Ensembl Protein Viewer:ENSP00000506163.1Re-query CCDS DB by Nucleotide ID:ENST00000681676Re-query CCDS DB by Protein ID:ENSP00000506163
Original member Current member NCBI NM_001145393.3 NP_001138865.1 Accepted alive Link to Nucleotide Sequence:NM_001145393.3Link to Protein Sequence:NP_001138865.1Re-query CCDS DB by Nucleotide ID:NM_001145393Re-query CCDS DB by Protein ID:NP_001138865Link to BLAST:NP_001138865.1
Original member Current member NCBI NM_001321279.2 NP_001308208.1 Accepted alive Link to Nucleotide Sequence:NM_001321279.2Link to Protein Sequence:NP_001308208.1Re-query CCDS DB by Nucleotide ID:NM_001321279Re-query CCDS DB by Protein ID:NP_001308208Link to BLAST:NP_001308208.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138865.1 439 Q8NCE0-3 439 100% 0 0
NP_001308208.1 439 Q8NCE0-3 439 100% 0 0

Chromosomal Locations for CCDS 46757.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 12489801 12489989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12492136 12492217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12496518 12496554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12503262 12503784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12516611 12516661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12519059 12519197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12528888 12528924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12529762 12529873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12531570 12531659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12532662 12532721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGGCAGAAGCAGTTTTCCATGCCCCAAAGAGGAAAAGAAGAGTGTATGAGACTTACGAGTCTCCATTGC
CAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAATTCAAGATATTCCGTGCTGAAATGATTAACAA
CAATGTGATTGTGAGGAATGCGGAGGACATTGAGCAGCTCTATGGGAAAGGTTATTTTGGAAAAGGTATT
CTTTCAAGAAGCCGTCCAAGCTTCACAATTTCAGATCCTAAACTGGTTGCTAAATGGAAAGATATGAAGA
CAAACATGCCTATCATCACATCAAAGAGGTATCAGCATAGTGTTGAGTGGGCAGCAGAGCTGATGCGTAG
ACAGGGGCAGGATGAGAGTACAGTGCGCAGAATCCTCAAGGATTACACGAAACCGCTTGAGCATCCTCCT
GTGAAAAGGAATGAAGAGGCTCAAGTGCATGACAAGCTTAACTCTGGAATGGTTTCCAACATGGAAGGCA
CAGCAGGGGGAGAGAGACCTTCTGTGGTAAACGGGGACTCTGGAAAGTCAGGTGGTGTGGGTGATCCCCG
TGAGCCATTAGGCTGCCTGCAGGAGGGCTCTGGCTGCCACCCAACAACAGAGAGCTTTGAGAAAAGCGTG
CGAGAGGATGCCTCACCTCTGCCCCATGTCTGTTGCTGCAAACAAGATGCTCTCATCCTCCAGCGTGGCC
TTCATCATGAAGACGGCAGCCAGCACATCGGCCTCCTGCATCCTGGGGACAGAGGGCCTGACCATGAGTA
CGTGCTGGTCGAGGAAGCGGAGTGTGCCATGAGCGAGAGGGAGGCTGCCCCAAATGAGGAAGCCTTTTTC
TTGGTCTATGCTCTGGGATGTTTAAGTATTTACTATGAGAAGGAGCCTTTAACGATAGTGAAGCTCTGGA
AAGCTTTCACTGTAGTTCAGCCCACGTTCAGAACCACCTACATGGCCTACCATTACTTTCGAAGCAAGGG
CTGGGTGCCCAAAGTGGGACTCAAGTACGGGACAGATTTACTGCTATATCGGAAAGGCCCTCCATTTTAC
CATGCAAGTTATTCTGTCATTATCGAGCTAGTTGATGACCATTTTGAAGGCTCTCTCCGCAGGCCTCTCA
GTTGGAAGTCCCTGGCTGCCTTGAGCAGAGTTTCCGTTAATGTCTCTAAGGAACTTATGCTGTGCTATTT
GATTAAACCCTCTACTATGACTGACAAGGAAATGGAGTCACCAGAATGTATGAAAAGGATTAAAGTTCAG
GAGGTGATTCTGAGTCGATGGGTTTCTTCACGAGAGAGGAGTGACCAAGACGATCTTTAA

Translation (439 aa):
MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQLYGKGYFGKGI
LSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQDESTVRRILKDYTKPLEHPP
VKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKSGGVGDPREPLGCLQEGSGCHPTTESFEKSV
REDASPLPHVCCCKQDALILQRGLHHEDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEEAFF
LVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFY
HASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELMLCYLIKPSTMTDKEMESPECMKRIKVQ
EVILSRWVSSRERSDQDDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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