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Report for CCDS46518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46518.1 Public Homo sapiens 2 SLC23A3 24 110 108 CCDS HistoryNCBI Gene:151295Re-query CCDS DB by CCDS ID:46518.1Re-query CCDS DB by GeneID:151295See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46518.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409878.8 ENSP00000386473.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409878.8Link to Ensembl Protein Viewer:ENSP00000386473.4Re-query CCDS DB by Nucleotide ID:ENST00000409878Re-query CCDS DB by Protein ID:ENSP00000386473
Original member Current member NCBI NM_001144889.2 NP_001138361.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001144889.2Link to Protein Sequence:NP_001138361.1Re-query CCDS DB by Nucleotide ID:NM_001144889Re-query CCDS DB by Protein ID:NP_001138361Link to BLAST:NP_001138361.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138361.1 610 Q6PIS1-1 610 100% 0 0

Chromosomal Locations for CCDS 46518.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 219161909 219162204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219162299 219162394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219163388 219163555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219164233 219164338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219165169 219165422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219167930 219168044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219168195 219168318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219168652 219168833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219169029 219169102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219169309 219169406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219169521 219169678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219169823 219169984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1833 nt):
ATGAGCCGATCACCCCTCAATCCCAGCCAACTCCGATCAGTGGGCTCCCAGGATGCCCTGGCCCCCTTGC
CTCCACCTGCTCCCCAGAATCCCTCCACCCACTCTTGGGACCCTTTGTGTGGATCTCTGCCTTGGGGCCT
CAGCTGTCTTCTGGCTCTGCAGCATGTCTTGGTCATGGCTTCTCTGCTCTGTGTCTCCCACCTGCTCCTG
CTTTGCAGTCTCTCCCCAGGAGGACTCTCTTACTCCCCTTCTCAGCTCCTGGCCTCCAGCTTCTTTTCAT
GTGGTATGTCTACCATCCTGCAAACTTGGATGGGCAGCAGGCTGCCTCTTGTCCAGGCTCCATCCTTAGA
GTTCCTTATCCCTGCTCTGGTGCTGACCAGCCAGAAGCTACCCCGGGCCATCCAGACACCTGGAAACTCC
TCCCTCATGCTGCACCTTTGTAGGGGACCTAGCTGCCATGGCCTGGGGCACTGGAACACTTCTCTCCAGG
AGGTGTCCGGGGCAGTGGTAGTATCTGGGCTGCTGCAGGGCATGATGGGGCTGCTGGGGAGTCCCGGCCA
CGTGTTCCCCCACTGTGGGCCCCTGGTGCTGGCTCCCAGCCTGGTTGTGGCAGGGCTCTCTGCCCACAGG
GAGGTAGCCCAGTTCTGCTTCACACACTGGGGGTTGGCCTTGCTGGTTATCCTGCTCATGGTGGTCTGTT
CTCAGCACCTGGGCTCCTGCCAGTTTCATGTGTGCCCCTGGAGGCGAGCTTCAACGTCATCAACTCACAC
TCCTCTCCCTGTCTTCCGGCTCCTTTCGGTGCTGATCCCAGTGGCCTGTGTGTGGATTGTTTCTGCCTTT
GTGGGATTCAGTGTTATCCCCCAGGAACTGTCTGCCCCCACCAAGGCACCATGGATTTGGCTGCCTCACC
CAGGTGAGTGGAATTGGCCTTTGCTGACGCCCAGAGCTCTGGCTGCAGGCATCTCCATGGCCTTGGCAGC
CTCCACCAGTTCCCTGGGCTGCTATGCCCTGTGTGGCCGGCTGCTGCATTTGCCTCCCCCACCTCCACAT
GCCTGCAGTCGAGGGCTGAGCCTGGAGGGGCTGGGCAGTGTGCTGGCCGGGCTGCTGGGAAGCCCCATGG
GCACTGCATCCAGCTTCCCCAACGTGGGCAAAGTGGGTCTTATCCAGGCTGGATCTCAGCAAGTGGCTCA
CTTAGTGGGGCTACTCTGCGTGGGGCTTGGACTCTCCCCCAGGTTGGCTCAGCTCCTCACCACCATCCCA
CTGCCTGTTGTTGGTGGGGTGCTGGGGGTGACCCAGGCTGTGGTTTTGTCTGCTGGATTCTCCAGCTTCT
ACCTGGCTGACATAGACTCTGGGCGAAATATCTTCATTGTGGGCTTCTCCATCTTCATGGCCTTGCTGCT
GCCAAGATGGTTTCGGGAAGCCCCAGTCCTGTTCAGCACAGGCTGGAGCCCCTTGGATGTATTACTGCAC
TCACTGCTGACACAGCCCATCTTCCTGGCTGGACTCTCAGGCTTCCTACTAGAGAACACGATTCCTGGCA
CACAGCTTGAGCGAGGCCTAGGTCAAGGGCTACCATCTCCTTTCACTGCCCAAGAGGCTCGAATGCCTCA
GAAGCCCAGGGAGAAGGCTGCTCAAGTGTACAGACTTCCTTTCCCCATCCAAAACCTCTGTCCCTGCATC
CCCCAGCCTCTCCACTGCCTCTGCCCACTGCCTGAAGACCCTGGGGATGAGGAAGGAGGCTCCTCTGAGC
CAGAAGAGATGGCAGACTTGCTGCCTGGCTCAGGGGAGCCATGCCCTGAATCTAGCAGAGAAGGGTTTAG
GTCCCAGAAATGA

Translation (610 aa):
MSRSPLNPSQLRSVGSQDALAPLPPPAPQNPSTHSWDPLCGSLPWGLSCLLALQHVLVMASLLCVSHLLL
LCSLSPGGLSYSPSQLLASSFFSCGMSTILQTWMGSRLPLVQAPSLEFLIPALVLTSQKLPRAIQTPGNS
SLMLHLCRGPSCHGLGHWNTSLQEVSGAVVVSGLLQGMMGLLGSPGHVFPHCGPLVLAPSLVVAGLSAHR
EVAQFCFTHWGLALLVILLMVVCSQHLGSCQFHVCPWRRASTSSTHTPLPVFRLLSVLIPVACVWIVSAF
VGFSVIPQELSAPTKAPWIWLPHPGEWNWPLLTPRALAAGISMALAASTSSLGCYALCGRLLHLPPPPPH
ACSRGLSLEGLGSVLAGLLGSPMGTASSFPNVGKVGLIQAGSQQVAHLVGLLCVGLGLSPRLAQLLTTIP
LPVVGGVLGVTQAVVLSAGFSSFYLADIDSGRNIFIVGFSIFMALLLPRWFREAPVLFSTGWSPLDVLLH
SLLTQPIFLAGLSGFLLENTIPGTQLERGLGQGLPSPFTAQEARMPQKPREKAAQVYRLPFPIQNLCPCI
PQPLHCLCPLPEDPGDEEGGSSEPEEMADLLPGSGEPCPESSREGFRSQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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