NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4606.1 Public Homo sapiens 6 BTN2A2 24 110 108 CCDS HistoryNCBI Gene:10385Re-query CCDS DB by CCDS ID:4606.1Re-query CCDS DB by GeneID:10385See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4606.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356709.9 ENSP00000349143.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356709.9Link to Ensembl Protein Viewer:ENSP00000349143.4Re-query CCDS DB by Nucleotide ID:ENST00000356709Re-query CCDS DB by Protein ID:ENSP00000349143
Original member Current member EBI ENST00000416795.6 ENSP00000399308.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416795.6Link to Ensembl Protein Viewer:ENSP00000399308.2Re-query CCDS DB by Nucleotide ID:ENST00000416795Re-query CCDS DB by Protein ID:ENSP00000399308
Original member Current member NCBI NM_001197237.2 NP_001184166.1 Accepted alive Link to Nucleotide Sequence:NM_001197237.2Link to Protein Sequence:NP_001184166.1Re-query CCDS DB by Nucleotide ID:NM_001197237Re-query CCDS DB by Protein ID:NP_001184166Link to BLAST:NP_001184166.1
Original member Current member NCBI NM_006995.5 NP_008926.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006995.5Link to Protein Sequence:NP_008926.2Re-query CCDS DB by Nucleotide ID:NM_006995Re-query CCDS DB by Protein ID:NP_008926Link to BLAST:NP_008926.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001184166.1 523 Q8WVV5-1 523 100% 0 0
NP_008926.2 523 Q8WVV5-1 523 100% 0 0

Chromosomal Locations for CCDS 4606.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 26383822 26383915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26385015 26385362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26388013 26388294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26390005 26390211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26390687 26390707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26390803 26390829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 26392375 26392967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGGAACCAGCTGCTGCTCTGCACTTCTCCCTGCCAGCCTCCCTCCTCCTCCTCCTGCTCCTCCTCCTTC
TCAGCCTGTGTGCACTGGTCTCAGCCCAGTTTACTGTCGTGGGGCCAGCTAATCCCATCCTGGCCATGGT
GGGAGAAAACACTACATTACGCTGCCATCTGTCACCCGAGAAAAATGCTGAGGACATGGAGGTGCGGTGG
TTCCGGTCTCAGTTCTCCCCCGCAGTGTTTGTGTATAAGGGTGGGAGAGAGAGAACAGAGGAGCAGATGG
AGGAGTACCGGGGAAGAATCACCTTTGTGAGCAAAGACATCAACAGGGGCAGCGTGGCCCTGGTCATACA
TAACGTCACAGCCCAGGAGAATGGGATCTACCGCTGTTACTTCCAAGAAGGCAGGTCCTACGATGAGGCC
ATCCTACGCCTCGTGGTGGCAGGCCTTGGGTCTAAGCCCCTCATTGAAATCAAGGCCCAAGAGGATGGGA
GCATCTGGCTGGAGTGCATATCTGGAGGGTGGTACCCAGAGCCCCTCACAGTGTGGAGGGACCCCTACGG
TGAGGTTGTGCCCGCCCTGAAGGAGGTTTCCATCGCTGATGCTGACGGCCTCTTCATGGTCACCACAGCT
GTGATCATCAGAGACAAGTATGTGAGGAATGTGTCCTGCTCTGTCAACAACACCCTGCTCGGCCAGGAGA
AGGAAACTGTCATTTTTATTCCAGAATCCTTTATGCCCAGCGCATCTCCCTGGATGGTGGCCCTAGCTGT
CATCCTGACCGCATCTCCCTGGATGGTGTCCATGACTGTCATCCTGGCTGTTTTCATCATCTTCATGGCT
GTCAGCATCTGTTGCATCAAGAAACTTCAAAGGGAAAAAAAGATTCTGTCAGGGGAAAAGAAAGTTGAAC
AAGAGGAAAAAGAAATTGCACAGCAACTTCAAGAAGAATTGCGATGGAGAAGAACATTCTTACATGCTGC
TGATGTGGTCCTGGATCCAGACACCGCTCATCCCGAGCTCTTCCTGTCAGAGGACCGGAGAAGTGTGAGG
CGGGGCCCCTACAGGCAGAGAGTGCCTGACAACCCAGAGAGATTCGACAGTCAGCCTTGTGTCCTGGGAT
GGGAGAGCTTCGCCTCAGGGAAACATTACTGGGAGGTGGAGGTGGAAAACGTGATGGTGTGGACTGTGGG
GGTCTGCAGACACAGTGTTGAGAGGAAAGGGGAGGTCCTGCTGATTCCTCAGAATGGCTTCTGGACCCTG
GAGATGTTTGGAAACCAATACCGGGCCCTGTCCTCCCCTGAGAGGATTCTCCCTTTGAAGGAGTCCCTTT
GCCGGGTGGGCGTCTTCCTGGACTATGAAGCTGGAGATGTCTCCTTCTACAACATGAGGGACAGATCGCA
CATCTACACATGTCCCCGTTCAGCCTTTACTGTGCCTGTGAGGCCCTTCTTCAGGTTAGGGTCTGATGAC
AGCCCCATCTTCATCTGCCCTGCACTCACAGGAGCCAGTGGGGTCATGGTGCCTGAAGAGGGCCTGAAAC
TTCACAGAGTGGGGACCCACCAGAGCCTATAG

Translation (523 aa):
MEPAAALHFSLPASLLLLLLLLLLSLCALVSAQFTVVGPANPILAMVGENTTLRCHLSPEKNAEDMEVRW
FRSQFSPAVFVYKGGRERTEEQMEEYRGRITFVSKDINRGSVALVIHNVTAQENGIYRCYFQEGRSYDEA
ILRLVVAGLGSKPLIEIKAQEDGSIWLECISGGWYPEPLTVWRDPYGEVVPALKEVSIADADGLFMVTTA
VIIRDKYVRNVSCSVNNTLLGQEKETVIFIPESFMPSASPWMVALAVILTASPWMVSMTVILAVFIIFMA
VSICCIKKLQREKKILSGEKKVEQEEKEIAQQLQEELRWRRTFLHAADVVLDPDTAHPELFLSEDRRSVR
RGPYRQRVPDNPERFDSQPCVLGWESFASGKHYWEVEVENVMVWTVGVCRHSVERKGEVLLIPQNGFWTL
EMFGNQYRALSSPERILPLKESLCRVGVFLDYEAGDVSFYNMRDRSHIYTCPRSAFTVPVRPFFRLGSDD
SPIFICPALTGASGVMVPEEGLKLHRVGTHQSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH