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Report for CCDS46046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46046.1 Public Homo sapiens 19 GRAMD1A 24 110 108 CCDS HistoryNCBI Gene:57655Re-query CCDS DB by CCDS ID:46046.1Re-query CCDS DB by GeneID:57655See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46046.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000411896.6 ENSP00000439267.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000411896.6Link to Ensembl Protein Viewer:ENSP00000439267.1Re-query CCDS DB by Nucleotide ID:ENST00000411896Re-query CCDS DB by Protein ID:ENSP00000439267
Original member Current member NCBI NM_001136199.3 NP_001129671.1 Accepted alive Link to Nucleotide Sequence:NM_001136199.3Link to Protein Sequence:NP_001129671.1Re-query CCDS DB by Nucleotide ID:NM_001136199Re-query CCDS DB by Protein ID:NP_001129671Link to BLAST:NP_001129671.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129671.1 713 Q96CP6-2 713 100% 0 0

Chromosomal Locations for CCDS 46046.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 35000479 35000486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35009119 35009329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35009888 35009972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35010092 35010195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35010284 35010379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35011474 35011554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35013256 35013368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35013541 35013691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35014189 35014387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35015824 35015967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35019191 35019309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35019391 35019533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35021502 35021605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35021691 35021864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35021951 35022038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35023236 35023343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35023427 35023547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35026049 35026141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2142 nt):
ATGTTCGACACCACACCCCACTCTGGCCGGAGCACGCCAAGCAGCTCCCCATCGCTCCGGAAACGGCTGC
AGCTCCTGCCCCCAAGCCGGCCCCCACCTGAGCCAGAACCAGGCACCATGGTGGAGAAGGGATCAGATAG
CTCCTCAGAGAAGGGTGGGGTGCCTGGGACCCCCAGCACCCAGAGCCTAGGCAGCCGGAACTTCATCCGC
AACAGCAAGATGCTGAGCCCCACTTATAAGCAGCGTAATGAGGACTTCCGGAAACTGTTCAGCAAACTCC
CCGAAGCAGAACGCCTCATTGTGGATTACTCCTGCGCCCTGCAGCGTGAGATCCTGCTCCAGGGCCGCCT
CTACCTCTCTGAGAACTGGATCTGCTTCTACAGCAACATCTTCCGCTGGGAGACCACGATCTCCATCCAG
CTGAAGGAAGTGACATGTCTGAAGAAGGAAAAGACGGCCAAGCTGATCCCCAACGCCATCCAGATCTGCA
CGGAGAGCGAGAAGCATTTCTTCACTTCCTTTGGGGCCCGTGACCGCTGCTTCCTCCTCATCTTCCGCCT
CTGGCAGAATGCACTGCTTGAAAAGACGCTGAGTCCCCGCGAGCTCTGGCACCTGGTGCATCAGTGCTAC
GGCTCAGAGCTGGGCCTCACCAGTGAGGATGAGGACTATGTCTCCCCCTTGCAGCTGAACGGTCTGGGGA
CCCCCAAGGAAGTGGGAGATGTGATCGCCCTGAGCGACATCACCTCCTCGGGGGCAGCTGACCGCAGCCA
GGAGCCAAGCCCAGTGGGTTCGCGCCGTGGCCATGTCACGCCCAACCTTTCCCGAGCCAGCAGCGACGCA
GACCATGGGGCAGAGGAGGACAAGGAGGAGCAGGTAGACAGCCAGCCAGACGCCTCCTCCAGCCAGACAG
TGACCCCGGTGGCTGAACCCCCGAGCACAGAGCCCACCCAGCCTGACGGGCCCACCACCCTGGGCCCCTT
GGATCTGCTGCCCAGTGAGGAGCTATTGACAGACACAAGTAACTCCTCTTCATCCACTGGGGAGGAAGCG
GACTTGGCTGCCCTGCTTCCCGACCTCTCCGGCCGCCTCCTCATCAACTCTGTCTTCCATGTGGGCGCTG
AGCGGCTCCAGCAGATGCTCTTCTCGGACTCGCCCTTCCTCCAGGGCTTCCTACAGCAGTGCAAGTTCAC
AGACGTGACGCTGAGCCCCTGGAGTGGGGACAGCAAGTGCCACCAGCGCCGGGTGCTGACGTACACCATC
CCCATCAGCAACCCACTGGGCCCCAAGAGCGCCTCCGTGGTGGAGACACAGACGCTGTTCCGGCGCGGCC
CCCAGGCCGGCGGGTGTGTGGTGGACTCCGAGGTGCTGACGCAGGGCATCCCCTACCAGGACTACTTCTA
CACTGCCCACCGCTACTGCATCCTGGGTCTGGCCCGGAACAAGGCGCGGCTCCGAGTGTCTTCTGAGATC
CGCTACCGAAAGCAGCCGTGGAGCCTGGTGAAGTCGCTCATTGAGAAGAACTCGTGGAGCGGCATTGAAG
ACTATTTCCACCATCTGGAGCGAGAGCTCGCCAAGGCTGAGAAGCTGTCTCTGGAGGAAGGCGGGAAGGA
TGCCCGGGGCTTGCTATCCGGCCTGCGGCGGCGGAAGCGGCCCCTGAGCTGGCGGGCTCACGGGGACGGG
CCCCAGCACCCAGATCCTGACCCCTGTGCCCGGGCCGGCATTCACACCTCGGGCTCCCTCAGCTCCCGCT
TCTCCGAACCATCTGTGGACCAGGGCCCCGGGGCAGGCATCCCCAGTGCCCTGGTTCTCATCAGCATTGT
CCTTATCATCCTCATCGCCCTCAACGTCCTGCTCTTCTACCGCCTCTGGTCCCTGGAAAGGACAGCCCAC
ACCTTTGAGTCCTGGCACAGCCTGGCCCTGGCCAAGGGCAAGTTCCCCCAGACGGCCACAGAGTGGGCCG
AGATCCTGGCGCTGCAGAAGCAATTCCACAGCGTGGAGGTGCACAAGTGGAGGCAGATCCTGCGGGCCTC
CGTGGAGCTCCTGGATGAGATGAAGTTCTCGCTGGAGAAGCTGCACCAAGGCATCACAGTCTCAGACCCT
CCCTTTGACACCCAGCCCCGGCCCGATGACAGCTTTTCCTGA

Translation (713 aa):
MFDTTPHSGRSTPSSSPSLRKRLQLLPPSRPPPEPEPGTMVEKGSDSSSEKGGVPGTPSTQSLGSRNFIR
NSKMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQ
LKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELWHLVHQCY
GSELGLTSEDEDYVSPLQLNGLGTPKEVGDVIALSDITSSGAADRSQEPSPVGSRRGHVTPNLSRASSDA
DHGAEEDKEEQVDSQPDASSSQTVTPVAEPPSTEPTQPDGPTTLGPLDLLPSEELLTDTSNSSSSTGEEA
DLAALLPDLSGRLLINSVFHVGAERLQQMLFSDSPFLQGFLQQCKFTDVTLSPWSGDSKCHQRRVLTYTI
PISNPLGPKSASVVETQTLFRRGPQAGGCVVDSEVLTQGIPYQDYFYTAHRYCILGLARNKARLRVSSEI
RYRKQPWSLVKSLIEKNSWSGIEDYFHHLERELAKAEKLSLEEGGKDARGLLSGLRRRKRPLSWRAHGDG
PQHPDPDPCARAGIHTSGSLSSRFSEPSVDQGPGAGIPSALVLISIVLIILIALNVLLFYRLWSLERTAH
TFESWHSLALAKGKFPQTATEWAEILALQKQFHSVEVHKWRQILRASVELLDEMKFSLEKLHQGITVSDP
PFDTQPRPDDSFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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