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Report for CCDS45907.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45907.1 Public Homo sapiens 19 LSM7 24 110 108 CCDS HistoryNCBI Gene:51690Re-query CCDS DB by CCDS ID:45907.1Re-query CCDS DB by GeneID:51690See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45907.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252622.15 ENSP00000252622.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252622.15Link to Ensembl Protein Viewer:ENSP00000252622.8Re-query CCDS DB by Nucleotide ID:ENST00000252622Re-query CCDS DB by Protein ID:ENSP00000252622
Original member Current member NCBI NM_016199.3 NP_057283.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016199.3Link to Protein Sequence:NP_057283.1Re-query CCDS DB by Nucleotide ID:NM_016199Re-query CCDS DB by Protein ID:NP_057283Link to BLAST:NP_057283.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057283.1 103 Q9UK45 103 100% 0 0

Chromosomal Locations for CCDS 45907.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 2321680 2321822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2324125 2324196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2328387 2328477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2328561 2328566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGGCGGATAAGGAGAAGAAGAAAAAGGAGAGCATCTTGGACTTGTCCAAGTACATCGACAAGACGATCC
GGGTAAAGTTCCAGGGAGGCCGCGAAGCCAGTGGAATCCTGAAGGGCTTCGACCCACTCCTCAACCTTGT
GCTGGACGGCACCATTGAGTACATGCGAGACCCTGACGACCAGTACAAGCTCACGGAGGACACCCGGCAG
CTGGGCCTCGTGGTGTGCCGGGGCACGTCCGTGGTGCTAATCTGCCCGCAGGACGGCATGGAGGCCATCC
CCAACCCCTTCATCCAGCAGCAGGACGCCTAG

Translation (103 aa):
MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQ
LGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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