NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45898.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45898.1 Public Homo sapiens 19 C19orf25 24 110 108 CCDS HistoryNCBI Gene:148223Re-query CCDS DB by CCDS ID:45898.1Re-query CCDS DB by GeneID:148223See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45898.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000436106.3 ENSP00000397394.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000436106.3Link to Ensembl Protein Viewer:ENSP00000397394.1Re-query CCDS DB by Nucleotide ID:ENST00000436106Re-query CCDS DB by Protein ID:ENSP00000397394
Original member Current member EBI ENST00000586564.5 ENSP00000466372.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000586564.5Link to Ensembl Protein Viewer:ENSP00000466372.1Re-query CCDS DB by Nucleotide ID:ENST00000586564Re-query CCDS DB by Protein ID:ENSP00000466372
Original member Current member EBI ENST00000592872.5 ENSP00000467861.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000592872.5Link to Ensembl Protein Viewer:ENSP00000467861.1Re-query CCDS DB by Nucleotide ID:ENST00000592872Re-query CCDS DB by Protein ID:ENSP00000467861
Original member Current member EBI ENST00000585675.6 ENSP00000468688.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000585675.6Link to Ensembl Protein Viewer:ENSP00000468688.2Re-query CCDS DB by Nucleotide ID:ENST00000585675Re-query CCDS DB by Protein ID:ENSP00000468688
Original member Current member NCBI NM_152482.3 NP_689695.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152482.3Link to Protein Sequence:NP_689695.2Re-query CCDS DB by Nucleotide ID:NM_152482Re-query CCDS DB by Protein ID:NP_689695Link to BLAST:NP_689695.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689695.2 118 Q9UFG5-1 118 100% 0 0

Chromosomal Locations for CCDS 45898.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 1475032 1475258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1478774 1478903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGGGCTCCAAGGCAAAGAAGCGCGTGCTGCTGCCCACCCGCCCAGCGCCCCCCACGGTGGAGCAGATCC
TGGAGGATGTGCGGGGTGCGCCGGCAGAGGATCCAGTGTTCACCATCCTGGCCCCGGAAGACCCCCCAGT
TCCCTTCAGGATGATGGAGGATGCGGAGGCCCCGGGAGAGCAGCTCTACCAGCAAAGCCGGGCCTACGTG
GCTGCCAACCAGCGGCTGCAGCAGGCGGGCAACGTGCTGAGGCAGAGGTGTGAGCTCCTGCAGCGAGCCG
GCGAGGACCTGGAGCGGGAGGTGGCCCAGATGAAGCAGGCAGCATTACCGGCAGCCGAGGCTGCCTCCTC
AGGCTGA

Translation (118 aa):
MGSKAKKRVLLPTRPAPPTVEQILEDVRGAPAEDPVFTILAPEDPPVPFRMMEDAEAPGEQLYQQSRAYV
AANQRLQQAGNVLRQRCELLQRAGEDLEREVAQMKQAALPAAEAASSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH