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Report for CCDS45570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45570.1 Public Homo sapiens 17 SGSM2 24 110 108 CCDS HistoryNCBI Gene:9905Re-query CCDS DB by CCDS ID:45570.1Re-query CCDS DB by GeneID:9905See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45570.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000426855.6 ENSP00000415107.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426855.6Link to Ensembl Protein Viewer:ENSP00000415107.2Re-query CCDS DB by Nucleotide ID:ENST00000426855Re-query CCDS DB by Protein ID:ENSP00000415107
Original member Current member NCBI NM_001098509.2 NP_001091979.1 Accepted alive Link to Nucleotide Sequence:NM_001098509.2Link to Protein Sequence:NP_001091979.1Re-query CCDS DB by Nucleotide ID:NM_001098509Re-query CCDS DB by Protein ID:NP_001091979Link to BLAST:NP_001091979.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091979.1 1006 O43147-1 1006 100% 0 0

Chromosomal Locations for CCDS 45570.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 2337689 2337745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2343545 2343620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2361637 2361799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2362109 2362270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2362838 2362905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2362989 2363134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2363465 2363599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2364059 2364183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2364596 2364663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2364897 2365057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2365215 2365341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2371262 2371415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2372190 2372254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2372343 2372488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2372953 2373081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2373331 2373513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2375492 2375875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2376137 2376261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2376733 2376815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2376959 2377068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2377857 2377953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2379036 2379203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2379432 2379520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3021 nt):
ATGGGCAGCGCAGAGGACGCAGTCAAAGAGAAACTGCTGTGGAACGTGAAGAAGGAGGTGAAGCAAATCA
TGGAGGAGGCTGTCACCAGGAAGTTTGTGCATGAAGACAGCAGCCACATCATTGCTTTATGTGGTGCAGT
GGAGGCTTGCCTCTTGCATCAGCTGAGACGCCGTGCCGCTGGCTTCCTGCGCAGTGACAAGATGGCAGCC
CTGTTCACCAAGGTGGGGAAGACGTGCCCAGTGGCGGGGGAGATTTGCCACAAGGTACAGGAGCTGCAGC
AACAAGCAGAGGGCAGGAAACCCTCAGGGGTCAGCCAGGAGGCCCTGCGGAGACAGGGCTCAGCCAGCGG
GAAGGCCCCGGCCCTCAGCCCTCAGGCCTTGAAACACGTATGGGTACGCACGGCGCTCATCGAGAAAGTT
CTGGACAAGGTCGTGCAATACCTGGCGGAAAACTGCAGCAAGTACTACGAGAAGGAGGCACTGCTGGCAG
ACCCTGTGTTCGGCCCGATCCTGGCCTCTCTTCTAGTGGGACCCTGTGCCTTGGAATACACTAAGCTCAA
GACAGCCGATCACTACTGGACTGACCCCTCTGCTGATGAGCTGGTCCAGCGGCACCGCATCCGGGGTCCA
CCTACTCGCCAGGACTCCCCTGCAAAGCGCCCAGCCCTGGGGATCCGGAAACGGCACTCAAGCGGCAGCG
CGTCGGAGGACAGGCTGGCTGCCTGTGCCCGCGAGTGTGTGGAGTCCCTGCACCAGAACTCACGGACGCG
GCTGCTCTATGGCAAGAACCACGTGCTGGTGCAGCCGAAGGAGGATATGGAGGCGGTCCCTGGCTACCTC
TCCCTGCACCAGTCTGCAGAGAGCCTGACTCTGAAGTGGACCCCCAACCAGCTCATGAATGGGACTCTGG
GGGACTCCGAGCTGGAAAAGAGCGTTTACTGGGACTATGCCCTCGTGGTGCCCTTCAGCCAGGTCGTGTG
CATCCACTGCCACCAGCAAAAGAGCGGTGGCACGCTTGTGCTGGTGAGCCAGGATGGCATCCAGAGGCCG
CCGCTGCATTTCCCACAGGGAGGACACCTGCTGTCCTTTCTGTCCTGTCTGGAGAATGGGCTGCTGCCTC
GGGGACAGCTAGAGCCCCCGCTGTGGACCCAGCAAGGGAAGGGGAAAGTGTTCCCCAAGCTACGGAAACG
AAGCAGCATTCGCTCCGTGGATATGGAGGAGATGGGCACGGGGCGGGCCACCGACTATGTGTTCCGGATC
ATCTACCCCGGCCACAGGCACGAGCACAACGCTGGTGACATGATCGAGATGCAGGGCTTTGGGCCCAGCC
TGCCAGCCTGGCACCTGGAGCCCCTGTGCAGTCAGGGCTCCTCCTGCCTCTCCTGCTCCTCCAGCAGCTC
CCCACATGCAACCCCCAGCCACTGTAGCTGCATCCCCGACCGGTTGCCGCTCAGGCTACTGTGTGAGAGT
ATGAAGAGGCAGATCGTGTCCCGGGCCTTCTACGGCTGGCTGGCACACTGCCGCCACCTGTCCACGGTGC
GGACCCACCTGTCGGCGCTGGTGCACCATAGCGTTATCCCACCTGACCGGCCCCCGGGGGCCTCCGCGGG
CCTCACCAAGGACGTGTGGAGCAAGTATCAGAAGGACAAAAAGAACTACAAAGAGCTGGAGCTGCTGCGG
CAAGTTTACTACGGAGGCATAGAGCACGAGATCCGCAAGGACGTCTGGCCCTTTCTGCTTGGCCACTACA
AGTTCGGCATGAGCAAGAAGGAGATGGAGCAGGTGGACGCAGTGGTGGCAGCAAGGTACCAGCAGGTGTT
GGCAGAGTGGAAGGCCTGCGAGGTGGTGGTGAGGCAGCGGGAGCGGGAGGCCCACCCAGCCACACGCACC
AAGTTCTCCTCAGGCAGCAGCATCGACAGCCACGTGCAGCGCCTCATCCACCGAGACTCCACCATCAGCA
ACGATGTGTTTATCTCAGTGGATGATCTGGAACCCCCGGAGCCCCAGGACCCTGAAGATTCCAGACCAAA
ACCTGAGCAGGAAGCAGGACCCGGGACTCCGGGCACCGCCGTGGTGGAGCAGCAGCATTCCGTGGAGTTC
GACTCTCCAGACTCAGGACTGCCCTCCTCTCGCAATTACTCCGTGGCCTCGGGCATCCAGTCAAGCCTAG
ATGAGGGGCAGAGCGTGGGCTTCGAAGAGGAGGACGGCGGTGGGGAGGAAGGCTCCAGTGGGCCCGGCCC
TGCAGCTCACACTTTGAGGGAGCCCCAGGATCCCAGCCAGGAGAAGCCTCAGGCCGGAGAACTGGAGGCC
GGAGAGGAGCTTGCGGCTGTGTGTGCGGCTGCCTACACTATAGAATTACTGGACACTGTGGCCTTAAACC
TGCACCGCATAGACAAGGATGTGCAGAGGTGTGACCGCAACTACTGGTACTTCACGCCCCCCAACCTCGA
GAGGCTCAGAGACGTCATGTGCAGCTACGTGTGGGAGCACCTGGACGTGGGCTATGTGCAGGGCATGTGC
GATCTGCTGGCGCCTCTCCTGGTCACCCTCGACAATGATCAGCTGGCCTACAGCTGCTTCAGCCACCTCA
TGAAGAGGATGAGCCAGAACTTCCCCAACGGGGGTGCCATGGACACCCACTTTGCCAACATGCGCTCCCT
CATCCAGATCCTGGACTCAGAGCTGTTTGAGCTGATGCATCAGAATGGAGACTACACCCACTTCTACTTC
TGTTATCGCTGGTTCCTGCTGGATTTTAAGAGAGAACTGCTGTATGAGGATGTGTTTGCTGTGTGGGAGG
TGATCTGGGCAGCCAGGCACATCTCATCGGAGCACTTTGTCCTGTTCATCGCCCTCGCCCTGGTGGAGGC
CTACCGAGAGATCATCCGTGACAACAACATGGACTTCACTGACATCATCAAGTTTTTCAATGAACGTGCT
GAGCATCACGATGCCCAGGAGATCCTGCGGATTGCCCGGGACCTCGTCCACAAGGTGCAGATGCTCATAG
AGAACAAGTGA

Translation (1006 aa):
MGSAEDAVKEKLLWNVKKEVKQIMEEAVTRKFVHEDSSHIIALCGAVEACLLHQLRRRAAGFLRSDKMAA
LFTKVGKTCPVAGEICHKVQELQQQAEGRKPSGVSQEALRRQGSASGKAPALSPQALKHVWVRTALIEKV
LDKVVQYLAENCSKYYEKEALLADPVFGPILASLLVGPCALEYTKLKTADHYWTDPSADELVQRHRIRGP
PTRQDSPAKRPALGIRKRHSSGSASEDRLAACARECVESLHQNSRTRLLYGKNHVLVQPKEDMEAVPGYL
SLHQSAESLTLKWTPNQLMNGTLGDSELEKSVYWDYALVVPFSQVVCIHCHQQKSGGTLVLVSQDGIQRP
PLHFPQGGHLLSFLSCLENGLLPRGQLEPPLWTQQGKGKVFPKLRKRSSIRSVDMEEMGTGRATDYVFRI
IYPGHRHEHNAGDMIEMQGFGPSLPAWHLEPLCSQGSSCLSCSSSSSPHATPSHCSCIPDRLPLRLLCES
MKRQIVSRAFYGWLAHCRHLSTVRTHLSALVHHSVIPPDRPPGASAGLTKDVWSKYQKDKKNYKELELLR
QVYYGGIEHEIRKDVWPFLLGHYKFGMSKKEMEQVDAVVAARYQQVLAEWKACEVVVRQREREAHPATRT
KFSSGSSIDSHVQRLIHRDSTISNDVFISVDDLEPPEPQDPEDSRPKPEQEAGPGTPGTAVVEQQHSVEF
DSPDSGLPSSRNYSVASGIQSSLDEGQSVGFEEEDGGGEEGSSGPGPAAHTLREPQDPSQEKPQAGELEA
GEELAAVCAAAYTIELLDTVALNLHRIDKDVQRCDRNYWYFTPPNLERLRDVMCSYVWEHLDVGYVQGMC
DLLAPLLVTLDNDQLAYSCFSHLMKRMSQNFPNGGAMDTHFANMRSLIQILDSELFELMHQNGDYTHFYF
CYRWFLLDFKRELLYEDVFAVWEVIWAARHISSEHFVLFIALALVEAYREIIRDNNMDFTDIIKFFNERA
EHHDAQEILRIARDLVHKVQMLIENK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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