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Report for CCDS45316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45316.1 Public Homo sapiens 15 DNAJA4 24 110 108 CCDS HistoryNCBI Gene:55466Re-query CCDS DB by CCDS ID:45316.1Re-query CCDS DB by GeneID:55466See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45316.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343789.7 ENSP00000339581.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343789.7Link to Ensembl Protein Viewer:ENSP00000339581.3Re-query CCDS DB by Nucleotide ID:ENST00000343789Re-query CCDS DB by Protein ID:ENSP00000339581
Original member Current member EBI ENST00000394852.8 ENSP00000378321.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394852.8Link to Ensembl Protein Viewer:ENSP00000378321.3Re-query CCDS DB by Nucleotide ID:ENST00000394852Re-query CCDS DB by Protein ID:ENSP00000378321
Original member Current member NCBI NM_001130182.2 NP_001123654.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001130182.2Link to Protein Sequence:NP_001123654.1Re-query CCDS DB by Nucleotide ID:NM_001130182Re-query CCDS DB by Protein ID:NP_001123654Link to BLAST:NP_001123654.1
Original member Current member NCBI NM_001387385.1 NP_001374314.1 Accepted alive Link to Nucleotide Sequence:NM_001387385.1Link to Protein Sequence:NP_001374314.1Re-query CCDS DB by Nucleotide ID:NM_001387385Re-query CCDS DB by Protein ID:NP_001374314Link to BLAST:NP_001374314.1
Original member Current member NCBI NM_001387388.1 NP_001374317.1 Accepted alive Link to Nucleotide Sequence:NM_001387388.1Link to Protein Sequence:NP_001374317.1Re-query CCDS DB by Nucleotide ID:NM_001387388Re-query CCDS DB by Protein ID:NP_001374317Link to BLAST:NP_001374317.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123654.1 397 Q8WW22-1 397 100% 0 0
NP_001374314.1 397 Q8WW22-1 397 100% 0 0
NP_001374317.1 397 Q8WW22-1 397 100% 0 0

Chromosomal Locations for CCDS 45316.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78264764 78264895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78270497 78270677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78273095 78273199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78274197 78274424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78275498 78275728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78280045 78280145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78280245 78280460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGGTGAAGGAGACCCAGTACTATGACATCCTGGGCGTGAAGCCCAGCGCGTCCCCGGAGGAGATCAAGA
AGGCCTATCGGAAGCTGGCGCTCAAGTACCACCCGGACAAGAACCCGGATGAGGGCGAGAAGTTTAAACT
CATATCCCAGGCATATGAAGTGCTTTCAGATCCAAAGAAAAGGGATGTTTATGACCAAGGCGGAGAGCAG
GCAATTAAAGAAGGAGGCTCAGGCAGCCCCAGCTTCTCTTCACCCATGGACATCTTTGACATGTTCTTTG
GTGGTGGTGGACGGATGGCTAGAGAGAGAAGAGGCAAGAATGTTGTACACCAGTTATCTGTAACTCTTGA
AGATCTATATAATGGAGTCACGAAGAAATTGGCCCTCCAGAAAAATGTAATTTGTGAGAAATGTGAAGGT
GTTGGTGGGAAGAAGGGATCGGTGGAGAAGTGCCCGCTGTGCAAGGGGCGGGGGATGCAGATCCACATCC
AGCAGATCGGGCCGGGCATGGTACAGCAGATCCAGACCGTGTGCATCGAGTGCAAGGGCCAGGGTGAGCG
CATCAACCCCAAGGACCGCTGCGAGAGCTGCAGCGGGGCCAAGGTGATCCGTGAGAAGAAGATTATCGAG
GTACATGTTGAAAAAGGTATGAAAGATGGGCAAAAGATACTATTTCATGGAGAAGGAGATCAGGAGCCTG
AGCTGGAGCCTGGTGATGTCATAATTGTGCTTGATCAGAAGGATCATAGTGTCTTTCAGAGACGAGGCCA
TGACTTGATCATGAAAATGAAAATTCAGCTTTCTGAAGCTCTTTGTGGCTTCAAGAAGACGATAAAAACA
TTGGACAATCGAATTCTTGTTATTACATCCAAAGCAGGTGAGGTGATAAAGCACGGGGACCTGAGATGCG
TGCGCGATGAAGGAATGCCCATCTACAAAGCACCCCTGGAAAAAGGGATTCTGATCATACAGTTTTTAGT
AATCTTTCCTGAAAAACACTGGCTTTCTCTGGAAAAGCTTCCTCAGCTGGAAGCTTTACTCCCTCCTCGA
CAGAAAGTGAGGATTACAGATGACATGGATCAGGTGGAGCTGAAGGAGTTTTGTCCCAATGAGCAGAACT
GGCGTCAGCACAGGGAGGCCTACGAGGAGGACGAAGACGGGCCCCAGGCTGGAGTGCAGTGCCAGACGGC
ATGA

Translation (397 aa):
MVKETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDVYDQGGEQ
AIKEGGSGSPSFSSPMDIFDMFFGGGGRMARERRGKNVVHQLSVTLEDLYNGVTKKLALQKNVICEKCEG
VGGKKGSVEKCPLCKGRGMQIHIQQIGPGMVQQIQTVCIECKGQGERINPKDRCESCSGAKVIREKKIIE
VHVEKGMKDGQKILFHGEGDQEPELEPGDVIIVLDQKDHSVFQRRGHDLIMKMKIQLSEALCGFKKTIKT
LDNRILVITSKAGEVIKHGDLRCVRDEGMPIYKAPLEKGILIIQFLVIFPEKHWLSLEKLPQLEALLPPR
QKVRITDDMDQVELKEFCPNEQNWRQHREAYEEDEDGPQAGVQCQTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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