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Report for CCDS45280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45280.1 Public Homo sapiens 15 MTFMT 24 110 108 CCDS HistoryNCBI Gene:123263Re-query CCDS DB by CCDS ID:45280.1Re-query CCDS DB by GeneID:123263See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45280.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000220058.9 ENSP00000220058.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000220058.9Link to Ensembl Protein Viewer:ENSP00000220058.4Re-query CCDS DB by Nucleotide ID:ENST00000220058Re-query CCDS DB by Protein ID:ENSP00000220058
Original member Current member EBI ENST00000558460.5 ENSP00000452646.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000558460.5Link to Ensembl Protein Viewer:ENSP00000452646.1Re-query CCDS DB by Nucleotide ID:ENST00000558460Re-query CCDS DB by Protein ID:ENSP00000452646
Original member Current member NCBI NM_139242.4 NP_640335.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139242.4Link to Protein Sequence:NP_640335.2Re-query CCDS DB by Nucleotide ID:NM_139242Re-query CCDS DB by Protein ID:NP_640335Link to BLAST:NP_640335.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_640335.2 389 Q96DP5-1 389 100% 0 0

Chromosomal Locations for CCDS 45280.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 65003062 65003256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65004854 65004936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65006113 65006191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65016436 65016527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65020197 65020272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65021514 65021616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65023672 65023794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65026831 65027040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65029405 65029613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGAGGGTGTTGGTGCGGCGCTGTTGGGGTCCTCCGCTGGCTCATGGCGCCAGGCGTGGGAGGCCGAGTC
CCCAGTGGCGAGCACTGGCCCGACTCGGCTGGGAGGACTGCCGGGACTCCAGAGTCCGCGAGAAGCCTCC
CTGGCGGGTGCTCTTCTTCGGCACGGACCAGTTCGCCCGCGAGGCGCTGCGGGCGCTGCACGCCGCCAGG
GAAAACAAAGAAGAAGAGTTAATCGACAAACTGGAGGTGGTCACAATGCCTTCCCCATCACCAAAAGGAC
TGCCAGTGAAGCAATATGCTGTGCAGTCTCAGCTTCCCGTATATGAGTGGCCGGATGTGGGATCTGGAGA
ATATGATGTTGGAGTAGTGGCTTCGTTTGGCCGACTTTTGAATGAGGCTCTTATTCTTAAATTTCCCTAT
GGCATATTGAATGTTCATCCCAGTTGCCTCCCGAGATGGCGTGGCCCAGCCCCTGTAATCCATACAGTGC
TTCACGGAGACACAGTTACTGGAGTAACAATTATGCAAATTAGACCTAAAAGGTTTGATGTAGGCCCAAT
TCTCAAACAAGAAACTGTTCCTGTGCCACCCAAGAGCACTGCAAAGGAATTGGAAGCAGTGTTGTCAAGA
CTGGGTGCCAACATGCTCATTTCAGTTTTGAAAAATTTGCCTGAAAGTCTGAGCAATGGAAGGCAGCAGC
CAATGGAGGGGGCGACTTACGCCCCTAAGATTTCTGCTGGTACCAGTTGTATAAAATGGGAGGAACAAAC
TTCAGAACAAATATTCAGACTTTACCGTGCCATTGGAAATATAATTCCGTTGCAGACGCTCTGGATGGCG
AATACCATTAAACTTCTGGATTTGGTAGAAGTTAACAGTTCAGTCCTTGCTGATCCAAAATTAACGGGAC
AGGCTCTTATTCCAGGATCAGTAATATACCACAAACAGTCACAAATACTATTGGTTTATTGCAAGGATGG
TTGGATTGGTGTTCGATCAGTGATGCTCAAGAAATCACTAACAGCTACTGACTTCTACAATGGATATTTG
CACCCCTGGTACCAGAAAAATTCCCAAGCTCAACCAAGCCAATGCAGATTTCAGACTCTCAGACTTCCAA
CAAAGAAGAAGCAGAAAAAAACTGTTGCTATGCAACAATGCATTGAGTAG

Translation (389 aa):
MRVLVRRCWGPPLAHGARRGRPSPQWRALARLGWEDCRDSRVREKPPWRVLFFGTDQFAREALRALHAAR
ENKEEELIDKLEVVTMPSPSPKGLPVKQYAVQSQLPVYEWPDVGSGEYDVGVVASFGRLLNEALILKFPY
GILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIRPKRFDVGPILKQETVPVPPKSTAKELEAVLSR
LGANMLISVLKNLPESLSNGRQQPMEGATYAPKISAGTSCIKWEEQTSEQIFRLYRAIGNIIPLQTLWMA
NTIKLLDLVEVNSSVLADPKLTGQALIPGSVIYHKQSQILLVYCKDGWIGVRSVMLKKSLTATDFYNGYL
HPWYQKNSQAQPSQCRFQTLRLPTKKKQKKTVAMQQCIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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