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Report for CCDS4508.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4508.1 Public Homo sapiens 6 SLC35B3 24 110 108 CCDS HistoryNCBI Gene:51000Re-query CCDS DB by CCDS ID:4508.1Re-query CCDS DB by GeneID:51000See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4508.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379660.4 ENSP00000368981.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379660.4Link to Ensembl Protein Viewer:ENSP00000368981.4Re-query CCDS DB by Nucleotide ID:ENST00000379660Re-query CCDS DB by Protein ID:ENSP00000368981
Original member Current member EBI ENST00000644923.2 ENSP00000496368.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000644923.2Link to Ensembl Protein Viewer:ENSP00000496368.1Re-query CCDS DB by Nucleotide ID:ENST00000644923Re-query CCDS DB by Protein ID:ENSP00000496368
Original member Current member NCBI NM_001142541.3 NP_001136013.1 Accepted alive Link to Nucleotide Sequence:NM_001142541.3Link to Protein Sequence:NP_001136013.1Re-query CCDS DB by Nucleotide ID:NM_001142541Re-query CCDS DB by Protein ID:NP_001136013Link to BLAST:NP_001136013.1
Original member Current member NCBI NM_001370476.2 NP_001357405.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370476.2Link to Protein Sequence:NP_001357405.1Re-query CCDS DB by Nucleotide ID:NM_001370476Re-query CCDS DB by Protein ID:NP_001357405Link to BLAST:NP_001357405.1
Original member Current member NCBI NM_015948.5 NP_057032.2 Accepted alive Link to Nucleotide Sequence:NM_015948.5Link to Protein Sequence:NP_057032.2Re-query CCDS DB by Nucleotide ID:NM_015948Re-query CCDS DB by Protein ID:NP_057032Link to BLAST:NP_057032.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136013.1 401 Q9H1N7-1 401 100% 0 0
NP_001357405.1 401 Q9H1N7-1 401 100% 0 0
NP_057032.2 401 Q9H1N7-1 401 100% 0 0

Chromosomal Locations for CCDS 4508.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 8413549 8413699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8414908 8414977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8416884 8416995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8417402 8417494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8419580 8419677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8420721 8420828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8422470 8422624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8427937 8428058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8429864 8430157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8434385 8434387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGGACTTGACACAGCAAGCAAAAGACATACAGAACATAACAGTCCAGGAAACCAACAAAAATAACTCTG
AAAGCATTGAATGCAGCAAAATAACAATGGATCTCAAGTTCAACAATTCCAGGAAATATATTTCTATCAC
TGTGCCATCCAAAACCCAAACAATGTCACCACACATCAAGTCAGTTGACGACGTTGTGGTACTTGGCATG
AATCTCAGCAAGTTTAACAAACTTACTCAGTTTTTCATATGTGTTGCTGGAGTTTTTGTATTTTACCTAA
TTTATGGGTATTTACAGGAATTAATATTTTCAGTGGAGGGTTTTAAGTCCTGTGGCTGGTACCTTACCTT
AGTGCAGTTTGCCTTTTACTCCATATTTGGCCTAATAGAACTTCAGCTTATTCAGGACAAAAGGAGGAGA
ATACCAGGAAAAACCTACATGATAATAGCTTTTCTAACTGTGGGTACTATGGGGTTATCAAACACTTCCT
TGGGCTACCTGAATTACCCTACCCAAGTCATCTTCAAGTGCTGCAAATTGATTCCTGTTATGCTAGGAGG
AGTTTTTATTCAAGGAAAGCGTTATAATGTTGCAGATGTGTCTGCTGCCATATGTATGAGCCTTGGCCTG
ATATGGTTTACCCTCGCTGACAGCACAACTGCACCAAATTTCAACCTGACGGGTGTGGTGCTTATTTCCC
TGGCACTATGTGCAGATGCCGTCATTGGAAATGTTCAAGAGAAAGCTATGAAACTTCATAATGCTTCTAA
TTCTGAAATGGTATTGTATTCGTATTCAATTGGTTTTGTATACATTTTACTGGGATTGACATGCACTAGT
GGATTAGGCCCTGCAGTAACATTTTGTGCAAAGAATCCAGTTCGGACCTATGGTTATGCGTTCCTTTTTT
CCCTCACTGGATATTTTGGAATCTCCTTTGTTCTGGCTTTGATTAAAATTTTTGGTGCACTTATTGCTGT
AACAGTGACAACAGGAAGAAAAGCAATGACCATTGTACTTTCGTTTATATTCTTTGCTAAACCATTCACG
TTTCAGTATGTATGGTCTGGTTTGTTAGTTGTCCTTGGTATATTTCTTAATGTTTACAGCAAAAATATGG
ATAAAATAAGACTACCATCACTGTATGATTTGATAAACAAATCAGTGGAAGCAAGAAAGTCAAGGACGCT
GGCACAGACTGTATAG

Translation (401 aa):
MDLTQQAKDIQNITVQETNKNNSESIECSKITMDLKFNNSRKYISITVPSKTQTMSPHIKSVDDVVVLGM
NLSKFNKLTQFFICVAGVFVFYLIYGYLQELIFSVEGFKSCGWYLTLVQFAFYSIFGLIELQLIQDKRRR
IPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKRYNVADVSAAICMSLGL
IWFTLADSTTAPNFNLTGVVLISLALCADAVIGNVQEKAMKLHNASNSEMVLYSYSIGFVYILLGLTCTS
GLGPAVTFCAKNPVRTYGYAFLFSLTGYFGISFVLALIKIFGALIAVTVTTGRKAMTIVLSFIFFAKPFT
FQYVWSGLLVVLGIFLNVYSKNMDKIRLPSLYDLINKSVEARKSRTLAQTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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