NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS44963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44963.1 Public Homo sapiens 12 C12orf42 24 110 108 CCDS HistoryNCBI Gene:374470Re-query CCDS DB by CCDS ID:44963.1Re-query CCDS DB by GeneID:374470See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44963.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378113.7 ENSP00000367353.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378113.7Link to Ensembl Protein Viewer:ENSP00000367353.2Re-query CCDS DB by Nucleotide ID:ENST00000378113Re-query CCDS DB by Protein ID:ENSP00000367353
Original member Current member EBI ENST00000548883.6 ENSP00000447908.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000548883.6Link to Ensembl Protein Viewer:ENSP00000447908.1Re-query CCDS DB by Nucleotide ID:ENST00000548883Re-query CCDS DB by Protein ID:ENSP00000447908
Original member Current member NCBI NM_001099336.3 NP_001092806.1 Accepted alive Link to Nucleotide Sequence:NM_001099336.3Link to Protein Sequence:NP_001092806.1Re-query CCDS DB by Nucleotide ID:NM_001099336Re-query CCDS DB by Protein ID:NP_001092806Link to BLAST:NP_001092806.1
Original member Current member NCBI NM_198521.5 NP_940923.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198521.5Link to Protein Sequence:NP_940923.2Re-query CCDS DB by Nucleotide ID:NM_198521Re-query CCDS DB by Protein ID:NP_940923Link to BLAST:NP_940923.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092806.1 360 Q96LP6-1 360 100% 0 0
NP_940923.2 360 Q96LP6-1 360 100% 0 0

Chromosomal Locations for CCDS 44963.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 103302108 103302559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103305974 103306345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103368887 103368998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103401607 103401675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103478349 103478426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGTCTACAGTGATATGTATGAAACAAAGGGAAGAAGAATTCTTGCTAACCATCAGACCTTTTGCAAACA
GGATGCAGAAATCCCCTTGCTATATTCCCATTGTGAGCAGTGCCACCCTGTGGGATAGAAGCACACCCAG
TGCAAAGCACATCCCTTGTTATGAAAGAACTTCAGTACCCTGCTCCAGATTCATTAATCACATGAAGAAT
TTCTCTGAATCTCCTAAATTTCGTAGTCTACACTTTCTGAATTTTCCAGTATTTCCAGAAAGGACTCAAA
ATTCAATGGCGTGTAAAAGACTACTTCATACTTGCCAGTACATAGTCCCCAGGTGTTCTGTAAGCACAGT
TTCTTTTGATGAAGAAAGCTATGAAGAATTCCGTTCCTCTCCAGCACCATCCAGTGAAACTGATGAGGCC
CCATTGATTTTTACTGCCAGAGGAGAAACTGAGGAGAGAGCCAGAGGAGCACCCAAGCAGGCTTGGAACA
GTTCATTTTTGGAACAACTGGTTAAAAAGCCTAACTGGGCACACTCAGTAAATCCTGTTCACCTGGAGGC
TCAGGGCATACACATCAGTAGACACACAAGACCTAAGGGCCAGCCCTTGAGCAGTCCCAAGAAAAATTCT
GGTTCTGCCGCCAGACCTTCCACTGCCATCGGCCTCTGCAGGAGGAGCCAGACGCCCGGCGCTCTGCAGA
GCACCGGCCCGAGTAACACAGAGCTCGAGCCGGAGGAGAGGATGGCAGTCCCAGCAGGCGCTCAGGCACA
CCCCGACGACATCCAAAGCAGACTCCTGGGCGCGTCCGGAAATCCCGTCGGAAAAGGCGCGGTTGCCATG
GCGCCGGAGATGCTCCCCAAGCATCCTCATACCCCGCGGGACAGGAGGCCTCAGGCGGACACCTCCCTCC
ATGGCAATCTGGCAGGAGCGCCCCTTCCTCTGCTGGCCGGTGCTTCCACCCATTTCCCCTCCAAGAGGTT
AATAAAGGTTTGCTCCTCAGCACCCCCCCGCCCAACCCGGCGTTTCCATACGGTTTGTTCACAGGCCCTT
TCTAGGCCGGTGGTGAATGCTCACTTACATTGA

Translation (360 aa):
MSTVICMKQREEEFLLTIRPFANRMQKSPCYIPIVSSATLWDRSTPSAKHIPCYERTSVPCSRFINHMKN
FSESPKFRSLHFLNFPVFPERTQNSMACKRLLHTCQYIVPRCSVSTVSFDEESYEEFRSSPAPSSETDEA
PLIFTARGETEERARGAPKQAWNSSFLEQLVKKPNWAHSVNPVHLEAQGIHISRHTRPKGQPLSSPKKNS
GSAARPSTAIGLCRRSQTPGALQSTGPSNTELEPEERMAVPAGAQAHPDDIQSRLLGASGNPVGKGAVAM
APEMLPKHPHTPRDRRPQADTSLHGNLAGAPLPLLAGASTHFPSKRLIKVCSSAPPRPTRRFHTVCSQAL
SRPVVNAHLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH