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Report for CCDS4483.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4483.2 Public Homo sapiens 6 BPHL 24 110 108 CCDS HistoryNCBI Gene:670Re-query CCDS DB by CCDS ID:4483.2Re-query CCDS DB by GeneID:670See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 4483.1
The coding region has been updated to represent an alternative 5' splice pattern, resulting in an different protein N-terminus that is more supported by the available transcript and homology data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4483.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380379.10 ENSP00000369739.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380379.10Link to Ensembl Protein Viewer:ENSP00000369739.5Re-query CCDS DB by Nucleotide ID:ENST00000380379Re-query CCDS DB by Protein ID:ENSP00000369739
Original member Current member NCBI NM_004332.4 NP_004323.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004332.4Link to Protein Sequence:NP_004323.2Re-query CCDS DB by Nucleotide ID:NM_004332Re-query CCDS DB by Protein ID:NP_004323Link to BLAST:NP_004323.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004323.2 291 Q86WA6-1 291 100% 0 0

Chromosomal Locations for CCDS 4483.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 3118741 3118847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3123657 3123760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3127242 3127408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3129045 3129198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3137362 3137493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3140386 3140509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3152488 3152575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGTGGCTGTGCTGGGCGGCCGGGGCGTGTTGCGCCTGCGGCTGCTTCTCTCAGCGCTGAAGCCCGGGA
TCCACGTCCCACGGGCCGGACCCGCGGCCGCGTTCGGCACCTCGGTAACCTCTGCCAAAGTGGCTGTGAA
TGGCGTTCAGCTGCATTACCAGCAGACTGGAGAGGGAGATCACGCAGTCCTGCTACTTCCTGGGATGTTA
GGAAGTGGAGAGACTGATTTTGGACCTCAGCTCAAGAACCTCAATAAGAAGCTCTTCACGGTGGTCGCCT
GGGATCCTCGAGGCTATGGACATTCCAGGCCCCCAGATCGCGATTTCCCAGCAGACTTTTTTGAAAGGGA
TGCAAAAGATGCTGTTGATTTGATGAAGGCGCTGAAGTTTAAGAAGGTTTCTCTGCTGGGGTGGAGTGAT
GGGGGCATAACCGCACTCATTGCTGCTGCAAAATATCCATCTTACATCCACAAGATGGTGATCTGGGGCG
CCAACGCCTACGTCACTGACGAAGACAGCATGATATATGAGGGCATCCGAGATGTTTCCAAATGGAGTGA
GAGAACAAGAAAGCCTCTAGAAGCCCTCTATGGGTATGACTACTTTGCCAGAACCTGTGAAAAGTGGGTG
GATGGCATAAGACAGTTTAAACATCTCCCAGATGGTAACATCTGCCGGCACCTGCTGCCCCGGGTCCAGT
GCCCCGCCTTGATTGTGCACGGTGAGAAGGATCCTCTGGTCCCACGGTTTCATGCCGACTTCATTCATAA
GCACGTGAAAGGCTCACGGCTGCATTTGATGCCAGAAGGCAAACACAACCTGCATTTGCGTTTTGCAGAT
GAATTCAACAAGTTAGCAGAAGACTTCCTACAATGA

Translation (291 aa):
MVAVLGGRGVLRLRLLLSALKPGIHVPRAGPAAAFGTSVTSAKVAVNGVQLHYQQTGEGDHAVLLLPGML
GSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKDAVDLMKALKFKKVSLLGWSD
GGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTRKPLEALYGYDYFARTCEKWV
DGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKGSRLHLMPEGKHNLHLRFAD
EFNKLAEDFLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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