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Report for CCDS4452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4452.1 Public Homo sapiens 5 RASGEF1C 24 110 108 CCDS HistoryNCBI Gene:255426Re-query CCDS DB by CCDS ID:4452.1Re-query CCDS DB by GeneID:255426See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4452.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361132.9 ENSP00000354963.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361132.9Link to Ensembl Protein Viewer:ENSP00000354963.4Re-query CCDS DB by Nucleotide ID:ENST00000361132Re-query CCDS DB by Protein ID:ENSP00000354963
Original member Current member EBI ENST00000393371.6 ENSP00000377037.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393371.6Link to Ensembl Protein Viewer:ENSP00000377037.2Re-query CCDS DB by Nucleotide ID:ENST00000393371Re-query CCDS DB by Protein ID:ENSP00000377037
Original member Current member NCBI NM_175062.4 NP_778232.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175062.4Link to Protein Sequence:NP_778232.2Re-query CCDS DB by Nucleotide ID:NM_175062Re-query CCDS DB by Protein ID:NP_778232Link to BLAST:NP_778232.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_778232.2 466 Q8N431-1 466 100% 0 0

Chromosomal Locations for CCDS 4452.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 180101501 180101525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180102071 180102143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180111457 180111580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180114446 180114541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180118609 180118704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180118787 180118866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180119346 180119448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180121060 180121149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180127609 180127683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180128410 180128610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180136378 180136515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180137590 180137712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 180137876 180138052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGCCACAGACGCTGAGTGCCTCCGACATGGTCACCCCAGGCAGCCTCAGCCCACCCCCCACCGAGCCCA
CAGATGGCGAACAGGCTGGGCAGCCCCTCCTGGATGGAGCGCCATCCTCAGCCTCCCTGGAAACACTGAT
CCAGCACCTGGTGCCCACAGCCGACTACTACCCCGAGAAAGCCTACATCTTCACCTTCCTGCTGAGCTCT
CGCCTCTTCATCGAGCCCCGGGAGCTCCTGGCCCGGGTCTGCCACCTGTGCATCGAGCAGCAGCAGCTGG
ACAAGCCGGTGCTGGACAAGGCCCGGGTCCGGAAGTTCGGCCCCAAACTGCTGCAGCTGTTGGCCGAGTG
GACCGAGACCTTCCCAAGGGACTTCCAGGAAGAGTCGACTATCGGGCACCTTAAGGACGTCGTGGGCCGC
ATCGCCCCCTGTGACGAGGCATACCGGAAGAGGATGCATCAGCTCCTACAGGCTCTGCACCAGAAGCTGG
CGGCTCTGCGCCAGGGGCCAGAAGGTCTGGTGGGTGCCGACAAGCCCATCTCCTACAGGACCAAGCCACC
AGCCTCCATCCACAGGGAGCTCCTTGGTGTCTGCAGCGACCCCTACACACTGGCCCAGCAGCTGACCCAC
GTGGAACTGGAGCGGCTGCGGCACATCGGGCCTGAGGAGTTTGTCCAGGCCTTTGTGAACAAGGACCCTC
TGGCCAGCACAAAGCCCTGCTTCAGTGACAAGACCAGCAACCTGGAGGCTTATGTGAAATGGTTCAACAG
GCTGTGCTACCTGGTGGCAACTGAGATCTGCATGCCAGCCAAGAAGAAGCAGAGGGCCCAGGTGATTGAG
TTCTTCATCGACGTGGCCCGCGAGTGCTTCAACATCGGCAACTTCAACTCCCTCATGGCCATCATCTCCG
GCATGAACATGAGCCCTGTCTCCAGGCTGAAGAAGACCTGGGCCAAAGTGAGGACGGCCAAGTTTTTCAT
CCTCGAGCACCAGATGGACCCAACGGGGAATTTCTGCAACTACAGGACAGCCCTGCGCGGGGCGGCCCAC
CGCTCCCTGACGGCCCACAGCAGCCGAGAGAAGATTGTCATTCCTTTCTTCAGCCTGCTCATCAAAGACA
TCTACTTCCTGAATGAGGGCTGCGCCAACCGCCTTCCCAATGGACACGTCAACTTTGAGAAATTCCTGGA
GCTGGCCAAGCAGGTGGGGGAGTTCATCACCTGGAAACAAGTGGAGTGTCCCTTCGAGCAAGACGCCAGC
ATCACCCACTACCTGTACACCGCCCCCATCTTCAGTGAGGATGGTCTTTATTTGGCTTCTTACGAAAGTG
AGAGCCCAGAGAACCAAACAGAAAAAGAAAGATGGAAAGCTCTAAGATCTTCTATTTTGGGGAAGACATG
A

Translation (466 aa):
MPQTLSASDMVTPGSLSPPPTEPTDGEQAGQPLLDGAPSSASLETLIQHLVPTADYYPEKAYIFTFLLSS
RLFIEPRELLARVCHLCIEQQQLDKPVLDKARVRKFGPKLLQLLAEWTETFPRDFQEESTIGHLKDVVGR
IAPCDEAYRKRMHQLLQALHQKLAALRQGPEGLVGADKPISYRTKPPASIHRELLGVCSDPYTLAQQLTH
VELERLRHIGPEEFVQAFVNKDPLASTKPCFSDKTSNLEAYVKWFNRLCYLVATEICMPAKKKQRAQVIE
FFIDVARECFNIGNFNSLMAIISGMNMSPVSRLKKTWAKVRTAKFFILEHQMDPTGNFCNYRTALRGAAH
RSLTAHSSREKIVIPFFSLLIKDIYFLNEGCANRLPNGHVNFEKFLELAKQVGEFITWKQVECPFEQDAS
ITHYLYTAPIFSEDGLYLASYESESPENQTEKERWKALRSSILGKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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