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Report for CCDS44339.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44339.1 Public Homo sapiens 1 CEP170 24 110 108 CCDS HistoryNCBI Gene:9859Re-query CCDS DB by CCDS ID:44339.1Re-query CCDS DB by GeneID:9859See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44339.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366542.6 ENSP00000355500.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366542.6Link to Ensembl Protein Viewer:ENSP00000355500.1Re-query CCDS DB by Nucleotide ID:ENST00000366542Re-query CCDS DB by Protein ID:ENSP00000355500
Original member Current member NCBI NM_014812.3 NP_055627.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014812.3Link to Protein Sequence:NP_055627.2Re-query CCDS DB by Nucleotide ID:NM_014812Re-query CCDS DB by Protein ID:NP_055627Link to BLAST:NP_055627.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055627.2 1584 Q5SW79-1 1584 100% 0 0

Chromosomal Locations for CCDS 44339.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 243126449 243126738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243128249 243128300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243129360 243129453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243136143 243136231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243139937 243140107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243142316 243142463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243156221 243156455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243164284 243166116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243169628 243169754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243172697 243172846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243185779 243186072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243186259 243186422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243191018 243191494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243199060 243199194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243200518 243200680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243200777 243200835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243211886 243211964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243221724 243221813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 243225176 243225280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4755 nt):
ATGAGCTTAACATCCTGGTTTTTGGTGAGCAGTGGAGGCACTCGCCACAGGCTGCCACGAGAAATGATTT
TTGTTGGAAGAGATGACTGTGAGCTCATGTTGCAGTCTCGTAGTGTGGATAAGCAACACGCTGTCATCAA
CTATGATGCGTCTACGGATGAGCATTTAGTGAAGGATTTGGGCAGCCTCAATGGGACTTTTGTGAATGAT
GTAAGGATTCCGGAACAGACTTATATCACCTTGAAACTTGAAGATAAGCTGAGATTTGGATATGATACAA
ATCTTTTCACTGTAGTACAAGGAGAAATGAGGGTCCCTGAAGAAGCTCTTAAGCATGAGAAGTTTACCAT
TCAGCTTCAGTTGTCCCAAAAATCTTCAGAATCAGAATTATCCAAATCTGCAAGTGCCAAAAGCATAGAT
TCAAAGGTAGCAGACGCTGCTACTGAAGTGCAGCACAAAACTACTGAAGCACTGAAATCCGAGGAAAAAG
CCATGGATATTTCTGCTATGCCCCGTGGTACTCCATTATATGGGCAGCCGTCATGGTGGGGGGATGATGA
GGTGGATGAAAAAAGAGCTTTCAAGACAAATGGCAAACCTGAAGAAAAAAACCATGAAGCTGGAACATCA
GGGTGCGGCATAGATGCCAAGCAAGTTGAGGAACAATCTGCAGCTGCAAATGAAGAAGTACTTTTTCCTT
TCTGTAGGGAACCAAGTTATTTTGAAATCCCTACAAAAGAATTCCAGCAACCATCACAAATAACAGAAAG
CACTATTCATGAAATCCCAACAAAAGACACGCCAAGTTCCCATATAACAGGTGCAGGGCATGCTTCATTT
ACCATTGAATTTGATGACAGTACCCCAGGGAAGGTAACTATTAGAGACCATGTGACAAAGTTTACTTCTG
ATCAGCGCCACAAGTCCAAGAAGTCTTCTCCTGGAACTCAAGACTTGCTGGGGATTCAAACAGGAATGAT
GGCACCCGAAAACAAAGTTGCTGACTGGCTAGCACAAAACAACCCTCCTCAAATGCTATGGGAAAGAACA
GAAGAGGATTCTAAAAGCATTAAAAGTGATGTTCCAGTGTACTTGAAAAGGTTGAAAGGAAATAAACATG
ATGATGGTACGCAAAGTGATTCAGAGAACGCTGGGGCTCACAGGCGCTGTAGCAAACGTGCAACTCTTGA
GGAACACTTAAGACGCCACCATTCAGAACACAAAAAGCTACAGAAGGTCCAGGCTACTGAAAAGCATCAA
GACCAAGCTGTTACTAGCTCTGCGCATCACAGAGGGGGGCATGGTGTTCCACATGGGAAATTGTTAAAAC
AGAAATCAGAGGAGCCATCGGTGTCAATACCCTTCCTACAAACTGCATTATTAAGAAGTTCAGGGAGTCT
TGGGCACAGACCAAGCCAGGAGATGGATAAAATGTTAAAAAATCAAGCAACTTCTGCTACTTCTGAAAAG
GATAATGATGATGACCAAAGTGACAAGGGTACTTATACCATTGAGTTAGAGAATCCCAACAGTGAGGAAG
TGGAAGCAAGAAAAATGATTGACAAGGTGTTTGGAGTAGATGACAATCAGGATTATAATAGGCCTGTTAT
CAACGAAAAACATAAAGATCTAATAAAAGATTGGGCTCTCAGTTCTGCTGCAGCAGTAATGGAAGAAAGA
AAACCACTGACTACATCTGGATTTCACCACTCAGAGGAAGGCACATCTTCATCTGGAAGCAAACGTTGGG
TTTCACAGTGGGCTAGTTTGGCTGCCAATCATACAAGGCATGATCAAGAAGAAAGGATAATGGAATTTTC
TGCACCTCTTCCTTTAGAGAATGAGACAGAGATCAGTGAGTCTGGCATGACAGTGAGAAGTACTGGCTCT
GCAACTTCCTTGGCTAGCCAGGGAGAGAGAAGGAGACGAACTCTTCCCCAGCTTCCAAATGAAGAAAAGT
CTCTTGAGAGCCACAGAGCAAAGGTTGTAACACAGAGGTCAGAGATAGGAGAAAAACAAGACACAGAACT
TCAGGAGAAAGAAACACCTACACAGGTATACCAGAAAGATAAACAAGATGCTGACAGACCCTTGAGTAAA
ATGAACAGGGCAGTAAATGGAGAGACTCTCAAAACTGGTGGAGATAATAAAACCCTACTTCACTTAGGCA
GCTCTGCTCCTGGAAAAGAGAAAAGTGAAACTGATAAGGAAACTTCTTTGGTAAAGCAAACATTAGCAAA
ACTTCAACAACAAGAACAAAGGGAGGAGGCTCAGTGGACACCTACTAAATTGTCTTCCAAAAATGTTTCA
GGTCAGACAGATAAATGTAGGGAGGAAACTTTTAAACAAGAATCACAACCTCCAGAAAAAAATTCAGGAC
ATTCTACAAGCAAAGGAGACAGAGTGGCACAAAGTGAGAGCAAGAGAAGAAAAGCTGAGGAAATTCTGAA
AAGTCAGACTCCAAAGGGAGGAGACAAGAAGGAATCCTCCAAGTCATTAGTGCGACAAGGGAGCTTCACT
ATAGAAAAACCCAGCCCAAACATACCCATAGAACTTATTCCCCATATAAATAAACAGACTTCCTCTACTC
CTTCTTCTTTAGCATTAACATCTGCAAGTAGAATACGAGAAAGAAGTGAGTCTTTGGATCCTGATTCTAG
TATGGACACAACCCTTATTCTAAAAGACACAGAAGCAGTAATGGCTTTTCTAGAAGCTAAACTACGTGAA
GATAATAAAACTGATGAAGGACCAGATACTCCCAGTTATAATAGAGACAATTCTATTTCACCAGAATCTG
ATGTAGATACAGCTAGTACAATCAGTCTGGTTACTGGAGAAACTGAAAGAAAGTCAACCCAAAAGCGAAA
GAGTTTCACTAGCCTCTATAAAGATAGGTGTTCCACAGGTTCTCCTTCCAAAGATGTTACAAAATCATCA
TCTTCAGGTGCTAGGGAAAAAATGGAAAAGAAAACAAAAAGTCGTTCCACAGATGTGGGTTCAAGAGCAG
ATGGTCGTAAATTTGTTCAGTCCAGTGGGAGAATAAGACAGCCCTCAGTAGACTTAACAGATGATGACCA
AACCTCTAGTGTACCTCATTCTGCCATCTCTGATATTATGTCATCTGATCAAGAAACTTACTCTTGTAAA
CCTCATGGACGGACTCCACTTACCTCAGCTGATGAGCATGTACATTCCAAACTGGAAGGAAGTAAAGTAA
CGAAATCTAAGACTTCTCCGGTGGTATCTGGTTCATCTAGTAAATCAACCACCCTTCCAAGGCCACGACC
TACCAGGACTTCCCTCTTGCGCAGAGCACGACTTGGTGAAGCTTCAGACAGTGAACTTGCTGATGCTGAC
AAAGCATCTGTTGCTTCTGAAGTATCCACAACAAGTTCTACATCAAAACCTCCCACAGGAAGGCGTAACA
TCTCTCGGATTGATTTATTGGCTCAGCCTCGTAGAACACGACTTGGCTCACTGTCAGCTCGTAGTGACTC
TGAAGCAACAATTTCTAGAAGTAGTGCCTCTTCGAGGACCGCAGAAGCCATCATTAGAAGTGGAGCCAGA
CTAGTACCATCAGATAAATTTTCTCCTAGAATTAGAGCTAACAGTATCTCTCGACTCTCAGACTCCAAGG
TCAAAAGTATGACCTCAGCTCATGGCTCTGCTTCAGTAAATTCAAGATGGAGGCGCTTTCCTACTGATTA
TGCTTCCACCTCAGAAGATGAATTTGGATCAAACCGTAATTCCCCTAAACATACCCGTCTACGTACTTCT
CCAGCCCTGAAAACCACTCGCTTGCAGAGCGCTGGATCAGCAATGCCTACTAGTTCTTCATTCAAACACC
GGATTAAAGAGCAGGAAGACTACATCCGAGATTGGACTGCTCATCGAGAAGAGATAGCCAGGATCAGCCA
AGATCTTGCTCTCATTGCTCGGGAGATCAACGATGTAGCAGGAGAGATAGATTCAGTGACTTCATCAGGC
ACTGCCCCTAGTACCACAGTAAGCACTGCTGCCACCACCCCTGGCTCTGCCATAGACACTAGAGAAGAGT
TGGTTGATCGTGTTTTTGATGAAAGCCTCAACTTCCGAAAGATTCCTCCATTAGTTCATTCCAAAACACC
AGAAGGAAACAACGGTCGATCTGGTGATCCAAGACCTCAAGCAGCAGAGCCTCCCGATCACTTAACAATT
ACAAGGCGGAGAACCTGGAGCAGGGATGAAGTCATGGGAGATAATCTGCTGCTGTCATCCGTCTTTCAGT
TCTCTAAGAAGATAAGACAATCTATAGATAAGACAGCTGGAAAGATCAGAATATTATTTAAAGACAAAGA
TCGGAATTGGGATGACATAGAAAGCAAATTAAGAGCCGAAAGTGAAGTCCCTATTGTGAAAACCTCAAGC
ATGGAGATTTCTTCTATCTTACAGGAACTGAAAAGAGTAGAAAAGCAGCTGCAAGCAATCAATGCTATGA
TTGATCCTGATGGAACTTTGGAGGCTCTGAACAACATGGGATTTCCCAGTGCTATGTTGCCATCTCCACC
GAAACAGAAGTCCAGCCCTGTGAATAACCACCACAGCCCGGGTCAGACACCAACACTTGGCCAACCAGAA
GCTAGGGCTCTTCATCCTGCTGCTGTTTCAGCCGCAGCTGAATTTGAGAATGCTGAATCTGAGGCTGATT
TCAGTATACATTTCAATAGATTCAACCCCGATGGGGAAGAGGAAGATGTTACAGTACAAGAATGA

Translation (1584 aa):
MSLTSWFLVSSGGTRHRLPREMIFVGRDDCELMLQSRSVDKQHAVINYDASTDEHLVKDLGSLNGTFVND
VRIPEQTYITLKLEDKLRFGYDTNLFTVVQGEMRVPEEALKHEKFTIQLQLSQKSSESELSKSASAKSID
SKVADAATEVQHKTTEALKSEEKAMDISAMPRGTPLYGQPSWWGDDEVDEKRAFKTNGKPEEKNHEAGTS
GCGIDAKQVEEQSAAANEEVLFPFCREPSYFEIPTKEFQQPSQITESTIHEIPTKDTPSSHITGAGHASF
TIEFDDSTPGKVTIRDHVTKFTSDQRHKSKKSSPGTQDLLGIQTGMMAPENKVADWLAQNNPPQMLWERT
EEDSKSIKSDVPVYLKRLKGNKHDDGTQSDSENAGAHRRCSKRATLEEHLRRHHSEHKKLQKVQATEKHQ
DQAVTSSAHHRGGHGVPHGKLLKQKSEEPSVSIPFLQTALLRSSGSLGHRPSQEMDKMLKNQATSATSEK
DNDDDQSDKGTYTIELENPNSEEVEARKMIDKVFGVDDNQDYNRPVINEKHKDLIKDWALSSAAAVMEER
KPLTTSGFHHSEEGTSSSGSKRWVSQWASLAANHTRHDQEERIMEFSAPLPLENETEISESGMTVRSTGS
ATSLASQGERRRRTLPQLPNEEKSLESHRAKVVTQRSEIGEKQDTELQEKETPTQVYQKDKQDADRPLSK
MNRAVNGETLKTGGDNKTLLHLGSSAPGKEKSETDKETSLVKQTLAKLQQQEQREEAQWTPTKLSSKNVS
GQTDKCREETFKQESQPPEKNSGHSTSKGDRVAQSESKRRKAEEILKSQTPKGGDKKESSKSLVRQGSFT
IEKPSPNIPIELIPHINKQTSSTPSSLALTSASRIRERSESLDPDSSMDTTLILKDTEAVMAFLEAKLRE
DNKTDEGPDTPSYNRDNSISPESDVDTASTISLVTGETERKSTQKRKSFTSLYKDRCSTGSPSKDVTKSS
SSGAREKMEKKTKSRSTDVGSRADGRKFVQSSGRIRQPSVDLTDDDQTSSVPHSAISDIMSSDQETYSCK
PHGRTPLTSADEHVHSKLEGSKVTKSKTSPVVSGSSSKSTTLPRPRPTRTSLLRRARLGEASDSELADAD
KASVASEVSTTSSTSKPPTGRRNISRIDLLAQPRRTRLGSLSARSDSEATISRSSASSRTAEAIIRSGAR
LVPSDKFSPRIRANSISRLSDSKVKSMTSAHGSASVNSRWRRFPTDYASTSEDEFGSNRNSPKHTRLRTS
PALKTTRLQSAGSAMPTSSSFKHRIKEQEDYIRDWTAHREEIARISQDLALIAREINDVAGEIDSVTSSG
TAPSTTVSTAATTPGSAIDTREELVDRVFDESLNFRKIPPLVHSKTPEGNNGRSGDPRPQAAEPPDHLTI
TRRRTWSRDEVMGDNLLLSSVFQFSKKIRQSIDKTAGKIRILFKDKDRNWDDIESKLRAESEVPIVKTSS
MEISSILQELKRVEKQLQAINAMIDPDGTLEALNNMGFPSAMLPSPPKQKSSPVNNHHSPGQTPTLGQPE
ARALHPAAVSAAAEFENAESEADFSIHFNRFNPDGEEEDVTVQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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