NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS44258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44258.1 Public Homo sapiens 1 TSTD1 24 110 108 CCDS HistoryNCBI Gene:100131187Re-query CCDS DB by CCDS ID:44258.1Re-query CCDS DB by GeneID:100131187See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 44258.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318289.14 ENSP00000325518.10 Accepted alive Link to Ensembl Transcript Viewer:ENST00000318289.14Link to Ensembl Protein Viewer:ENSP00000325518.10Re-query CCDS DB by Nucleotide ID:ENST00000318289Re-query CCDS DB by Protein ID:ENSP00000325518
Original member Current member NCBI NM_001113205.2 NP_001106676.1 Accepted alive Link to Nucleotide Sequence:NM_001113205.2Link to Protein Sequence:NP_001106676.1Re-query CCDS DB by Nucleotide ID:NM_001113205Re-query CCDS DB by Protein ID:NP_001106676Link to BLAST:NP_001106676.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106676.1 109 Q8NFU3-3 109 100% 0 0

Chromosomal Locations for CCDS 44258.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161037879 161038075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161038551 161038673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161038880 161038889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (330 nt):
ATGGCTGGAGCGCCCACGGTCTCGCTTCCTGAACTCCGTTCACTCCTAGCCTCCGGACGGGCCCGGCTCT
TCGACGTGCGCTCTCGCGAGGAGGCGGCAGCTGGGACCATCCCAGGGGCGCTCAACATCCCGGTGTCCGA
GTTGGAGAGTGCTCTGCAGATGGAGCCAGCTGCCTTCCAGGCTTTATATTCTGCTGAGAAGCCAAAGCTG
GAAGATGAGCATCTCGTTTTCTTCTGTCAGATGGGCAAGCGGGGCCTCCAGGCCACGCAGCTGGCCCGGA
GTCTTGGATACACTGGGTACGGGGAGGTGTGGCTGCTAGCTGGGAGGTGA

Translation (109 aa):
MAGAPTVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQALYSAEKPKL
EDEHLVFFCQMGKRGLQATQLARSLGYTGYGEVWLLAGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH