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Report for CCDS44201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44201.1 Public Homo sapiens 1 GDAP2 24 110 108 CCDS HistoryNCBI Gene:54834Re-query CCDS DB by CCDS ID:44201.1Re-query CCDS DB by GeneID:54834See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44201.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369442.3 ENSP00000358450.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369442.3Link to Ensembl Protein Viewer:ENSP00000358450.3Re-query CCDS DB by Nucleotide ID:ENST00000369442Re-query CCDS DB by Protein ID:ENSP00000358450
Original member Current member NCBI NM_001135589.3 NP_001129061.1 Accepted alive Link to Nucleotide Sequence:NM_001135589.3Link to Protein Sequence:NP_001129061.1Re-query CCDS DB by Nucleotide ID:NM_001135589Re-query CCDS DB by Protein ID:NP_001129061Link to BLAST:NP_001129061.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129061.1 496 Q9NXN4-2 496 100% 0 0

Chromosomal Locations for CCDS 44201.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 117877964 117878152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117881823 117881877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117883488 117883627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117886577 117886653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117887698 117887774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117896833 117896989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117899057 117899216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117906506 117906582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117911994 117912082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117912530 117912683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117918597 117918736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117920182 117920357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGGATCCCTTAGGTGCACCTTCCCAGTTTGTGGATGTGGATACACTACCAAGCTGGGGTGACTCATGCC
AAGATGAATTAAATTCCTCTGATACTACAGCTGAAATATTTCAGGAAGACACTGTTCGATCACCTTTTCT
TTATAATAAGGACGTCAATGGAAAAGTGGTTCTTTGGAAAGGAGATGTGGCATTACTGAACTGTACAGCC
ATTGTGAATACCAGCAATGAAAGTCTCACAGATAAGAATCCTGTGTCAGAAAGTATCTTCATGCTTGCAG
GGCCTGATTTGAAGGAAGATCTCCAGAAACTTAAAGGGTGCCGAACAGGTGAAGCAAAATTGACAAAAGG
ATTCAATCTAGCTGCCCGGTTCATCATTCACACAGTGGGACCTAAATATAAAAGCCGCTATCGCACAGCA
GCTGAGAGTTCCCTTTATAGCTGCTACAGAAACGTACTTCAACTAGCAAAAGAGCAGTCAATGTCTTCTG
TTGGCTTCTGTGTCATCAATTCTGCAAAACGTGGTTATCCTTTAGAGGATGCAACACACATAGCACTTCG
CACTGTAAGAAGATTCCTAGAGATTCATGGGGAAACCATTGAAAAAGTAGTATTTGCTGTCTCTGATCTT
GAAGAGGGTACTTACCAAAAGCTGCTACCTCTCTACTTCCCAAGGTCATTAAAAGAGGAGAATCGATCAT
TGCCCTACCTACCTGCAGATATTGGAAATGCAGAAGGGGAGCCTGTGGTACCTGAACGACAGATTAGAAT
AAGTGAGAAACCTGGTGCTCCAGAAGATAACCAAGAAGAGGAGGATGAAGGCTTGGGAGTTGATCTCTCT
TTCATTGGCTCTCATGCTTTTGCTCGAATGGAAGGAGATATTGACAAGCAAAGAAAACTGATCCTTCAGG
GACAATTATCAGAGGCAGCTCTGCAGAAGCAGCATCAAAGAAATTATAATCGCTGGTTATGTCAAGCAAG
ATCTGAGGATCTGTCTGATATTGCTTCTCTAAAAGCCTTATACCAAACAGGTGTTGATAACTGTGGTCGA
ACAGTGATGGTGGTAGTTGGAAGAAACATTCCTGTAACATTAATAGATATGGACAAGGCTCTCTTATATT
TCATTCATGTAATGGATCACATTGCTGTGAAGGAGTATGTATTAGTGTATTTTCACACCCTGACCAGCGA
ATACAATCACCTGGACTCCGACTTCCTGAAGAAACTCTACGATGTTGTTGATGTCAAGTACAAGAGGAAT
TTGAAGGCTGTTTATTTTGTACATCCCACATTTCGTTCAAAGGTGTCAACATGGTTTTTTACCACCTTTT
CTGTCTCAGGACTGAAGGACAAAATCCACCATGTGGACAGCCTCCACCAGCTGTTTTCTGCCATATCACC
AGAACAGATTGACTTTCCTCCTTTTGTCCTTGAATATGATGCCAGGGTAAGAAGTACCAGAAGTTCTCCC
TCACCTGGTATGGTATATTAA

Translation (496 aa):
MDPLGAPSQFVDVDTLPSWGDSCQDELNSSDTTAEIFQEDTVRSPFLYNKDVNGKVVLWKGDVALLNCTA
IVNTSNESLTDKNPVSESIFMLAGPDLKEDLQKLKGCRTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTA
AESSLYSCYRNVLQLAKEQSMSSVGFCVINSAKRGYPLEDATHIALRTVRRFLEIHGETIEKVVFAVSDL
EEGTYQKLLPLYFPRSLKEENRSLPYLPADIGNAEGEPVVPERQIRISEKPGAPEDNQEEEDEGLGVDLS
FIGSHAFARMEGDIDKQRKLILQGQLSEAALQKQHQRNYNRWLCQARSEDLSDIASLKALYQTGVDNCGR
TVMVVVGRNIPVTLIDMDKALLYFIHVMDHIAVKEYVLVYFHTLTSEYNHLDSDFLKKLYDVVDVKYKRN
LKAVYFVHPTFRSKVSTWFFTTFSVSGLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYDARVRSTRSSP
SPGMVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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