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Report for CCDS44012.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44012.1 Public Homo sapiens X GPR50 24 110 108 CCDS HistoryNCBI Gene:9248Re-query CCDS DB by CCDS ID:44012.1Re-query CCDS DB by GeneID:9248See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44012.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000218316.4 ENSP00000218316.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000218316.4Link to Ensembl Protein Viewer:ENSP00000218316.3Re-query CCDS DB by Nucleotide ID:ENST00000218316Re-query CCDS DB by Protein ID:ENSP00000218316
Original member Current member NCBI NM_004224.3 NP_004215.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004224.3Link to Protein Sequence:NP_004215.2Re-query CCDS DB by Nucleotide ID:NM_004224Re-query CCDS DB by Protein ID:NP_004215Link to BLAST:NP_004215.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004215.2 617 Q13585 617 100% 0 0

Chromosomal Locations for CCDS 44012.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 151176722 151176908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151179771 151181437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGGGGCCCACCCTAGCGGTTCCCACCCCCTATGGCTGTATTGGCTGTAAGCTACCCCAGCCAGAATACC
CACCGGCTCTAATCATCTTTATGTTCTGCGCGATGGTTATCACCATCGTTGTAGACCTAATCGGCAACTC
CATGGTCATTTTGGCTGTGACGAAGAACAAGAAGCTCCGGAATTCTGGCAACATCTTCGTGGTCAGTCTC
TCTGTGGCCGATATGCTGGTGGCCATCTACCCATACCCTTTGATGCTGCATGCCATGTCCATTGGGGGCT
GGGATCTGAGCCAGTTACAGTGCCAGATGGTCGGGTTCATCACAGGGCTGAGTGTGGTCGGCTCCATCTT
CAACATCGTGGCAATCGCTATCAACCGTTACTGCTACATCTGCCACAGCCTCCAGTACGAACGGATCTTC
AGTGTGCGCAATACCTGCATCTACCTGGTCATCACCTGGATCATGACCGTCCTGGCTGTCCTGCCCAACA
TGTACATTGGCACCATCGAGTACGATCCTCGCACCTACACCTGCATCTTCAACTATCTGAACAACCCTGT
CTTCACTGTTACCATCGTCTGCATCCACTTCGTCCTCCCTCTCCTCATCGTGGGTTTCTGCTACGTGAGG
ATCTGGACCAAAGTGCTGGCGGCCCGTGACCCTGCAGGGCAGAATCCTGACAACCAACTTGCTGAGGTTC
GCAATTTTCTAACCATGTTTGTGATCTTCCTCCTCTTTGCAGTGTGCTGGTGCCCTATCAACGTGCTCAC
TGTCTTGGTGGCTGTCAGTCCGAAGGAGATGGCAGGCAAGATCCCCAACTGGCTTTATCTTGCAGCCTAC
TTCATAGCCTACTTCAACAGCTGCCTCAACGCTGTGATCTACGGGCTCCTCAATGAGAATTTCCGAAGAG
AATACTGGACCATCTTCCATGCTATGCGGCACCCTATCATATTCTTCTCTGGCCTCATCAGTGATATTCG
TGAGATGCAGGAGGCCCGTACCCTGGCCCGCGCCCGTGCCCATGCTCGCGACCAAGCTCGTGAACAAGAC
CGTGCCCATGCCTGTCCTGCTGTGGAGGAAACCCCGATGAATGTCCGGAATGTTCCATTACCTGGTGATG
CTGCAGCTGGCCACCCCGACCGTGCCTCTGGCCACCCTAAGCCCCATTCCAGATCCTCCTCTGCCTATCG
CAAATCTGCCTCTACCCACCACAAGTCTGTCTTTAGCCACTCCAAGGCTGCCTCTGGTCACCTCAAGCCT
GTCTCTGGCCACTCCAAGCCTGCCTCTGGTCACCCCAAGTCTGCCACTGTCTACCCTAAGCCTGCCTCTG
TCCATTTCAAGGCTGACTCTGTCCATTTCAAGGGTGACTCTGTCCATTTCAAGCCTGACTCTGTTCATTT
CAAGCCTGCTTCCAGCAACCCCAAGCCCATCACTGGCCACCATGTCTCTGCTGGCAGCCACTCCAAGTCT
GCCTTCAGTGCTGCCACCAGCCACCCTAAACCCACCACTGGCCACATCAAGCCAGCTACCAGCCATGCTG
AGCCCACCACTGCTGACTATCCCAAGCCTGCCACTACCAGCCACCCTAAGCCCACTGCTGCTGACAACCC
TGAGCTCTCTGCCTCCCATTGCCCCGAGATCCCTGCCATTGCCCACCCTGTGTCTGACGACAGTGACCTC
CCTGAGTCGGCCTCTAGCCCTGCCGCTGGGCCCACCAAGCCTGCTGCCAGCCAGCTGGAGTCTGACACCA
TCGCTGACCTTCCTGACCCTACTGTAGTCACTACCAGTACCAATGATTACCATGATGTCGTGGTTATTGA
TGTTGAAGATGATCCTGATGAAATGGCTGTGTGA

Translation (617 aa):
MGPTLAVPTPYGCIGCKLPQPEYPPALIIFMFCAMVITIVVDLIGNSMVILAVTKNKKLRNSGNIFVVSL
SVADMLVAIYPYPLMLHAMSIGGWDLSQLQCQMVGFITGLSVVGSIFNIVAIAINRYCYICHSLQYERIF
SVRNTCIYLVITWIMTVLAVLPNMYIGTIEYDPRTYTCIFNYLNNPVFTVTIVCIHFVLPLLIVGFCYVR
IWTKVLAARDPAGQNPDNQLAEVRNFLTMFVIFLLFAVCWCPINVLTVLVAVSPKEMAGKIPNWLYLAAY
FIAYFNSCLNAVIYGLLNENFRREYWTIFHAMRHPIIFFSGLISDIREMQEARTLARARAHARDQAREQD
RAHACPAVEETPMNVRNVPLPGDAAAGHPDRASGHPKPHSRSSSAYRKSASTHHKSVFSHSKAASGHLKP
VSGHSKPASGHPKSATVYPKPASVHFKADSVHFKGDSVHFKPDSVHFKPASSNPKPITGHHVSAGSHSKS
AFSAATSHPKPTTGHIKPATSHAEPTTADYPKPATTSHPKPTAADNPELSASHCPEIPAIAHPVSDDSDL
PESASSPAAGPTKPAASQLESDTIADLPDPTVVTTSTNDYHDVVVIDVEDDPDEMAV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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