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Report for CCDS43557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43557.1 Public Homo sapiens 7 HNRNPA2B1 24 110 108 CCDS HistoryNCBI Gene:3181Re-query CCDS DB by CCDS ID:43557.1Re-query CCDS DB by GeneID:3181See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43557.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354667.8 ENSP00000346694.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354667.8Link to Ensembl Protein Viewer:ENSP00000346694.4Re-query CCDS DB by Nucleotide ID:ENST00000354667Re-query CCDS DB by Protein ID:ENSP00000346694
Original member Current member EBI ENST00000356674.8 ENSP00000349101.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356674.8Link to Ensembl Protein Viewer:ENSP00000349101.8Re-query CCDS DB by Nucleotide ID:ENST00000356674Re-query CCDS DB by Protein ID:ENSP00000349101
Original member Current member EBI ENST00000360787.8 ENSP00000354021.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360787.8Link to Ensembl Protein Viewer:ENSP00000354021.4Re-query CCDS DB by Nucleotide ID:ENST00000360787Re-query CCDS DB by Protein ID:ENSP00000354021
Original member Current member EBI ENST00000679123.1 ENSP00000503360.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679123.1Link to Ensembl Protein Viewer:ENSP00000503360.1Re-query CCDS DB by Nucleotide ID:ENST00000679123Re-query CCDS DB by Protein ID:ENSP00000503360
Original member Current member EBI ENST00000678675.1 ENSP00000503476.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678675.1Link to Ensembl Protein Viewer:ENSP00000503476.1Re-query CCDS DB by Nucleotide ID:ENST00000678675Re-query CCDS DB by Protein ID:ENSP00000503476
Original member Current member EBI ENST00000679001.1 ENSP00000503514.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679001.1Link to Ensembl Protein Viewer:ENSP00000503514.1Re-query CCDS DB by Nucleotide ID:ENST00000679001Re-query CCDS DB by Protein ID:ENSP00000503514
Original member Current member EBI ENST00000679021.1 ENSP00000503885.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679021.1Link to Ensembl Protein Viewer:ENSP00000503885.1Re-query CCDS DB by Nucleotide ID:ENST00000679021Re-query CCDS DB by Protein ID:ENSP00000503885
Original member Current member EBI ENST00000676746.1 ENSP00000504329.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676746.1Link to Ensembl Protein Viewer:ENSP00000504329.1Re-query CCDS DB by Nucleotide ID:ENST00000676746Re-query CCDS DB by Protein ID:ENSP00000504329
Original member Current member NCBI NM_031243.3 NP_112533.1 Accepted alive Link to Nucleotide Sequence:NM_031243.3Link to Protein Sequence:NP_112533.1Re-query CCDS DB by Nucleotide ID:NM_031243Re-query CCDS DB by Protein ID:NP_112533Link to BLAST:NP_112533.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112533.1 353 P22626-1 353 100% 0 0

Chromosomal Locations for CCDS 43557.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 26192516 26192577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26193251 26193373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26193575 26193694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26195847 26195909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26196401 26196481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26196557 26196658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26196807 26197017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26197315 26197461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26197622 26197732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26197831 26197866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26200572 26200577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGGAGAAAACTTTAGAAACTGTTCCTTTGGAGAGGAAAAAGAGAGAAAAGGAACAGTTCCGTAAGCTCT
TTATTGGTGGCTTAAGCTTTGAAACCACAGAAGAAAGTTTGAGGAACTACTACGAACAATGGGGAAAGCT
TACAGACTGTGTGGTAATGAGGGATCCTGCAAGCAAAAGATCAAGAGGATTTGGTTTTGTAACTTTTTCA
TCCATGGCTGAGGTTGATGCTGCCATGGCTGCAAGACCTCATTCAATTGATGGGAGAGTAGTTGAGCCAA
AACGTGCTGTAGCAAGAGAGGAATCTGGAAAACCAGGGGCTCATGTAACTGTGAAGAAGCTGTTTGTTGG
CGGAATTAAAGAAGATACTGAGGAACATCACCTTAGAGATTACTTTGAGGAATATGGAAAAATTGATACC
ATTGAGATAATTACTGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGCTTTGTTACTTTTGATGACCATG
ATCCTGTGGATAAAATCGTATTGCAGAAATACCATACCATCAATGGTCATAATGCAGAAGTAAGAAAGGC
TTTGTCTAGACAAGAAATGCAGGAAGTTCAGAGTTCTAGGAGTGGAAGAGGAGGCAACTTTGGCTTTGGG
GATTCACGTGGTGGCGGTGGAAATTTCGGACCAGGACCAGGAAGTAACTTTAGAGGAGGATCTGATGGAT
ATGGCAGTGGACGTGGATTTGGGGATGGCTATAATGGGTATGGAGGAGGACCTGGAGGTGGCAATTTTGG
AGGTAGCCCCGGTTATGGAGGAGGAAGAGGAGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGT
GGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAGGAAATTATGGAAGTGGAAATTACAATGATTTTG
GAAATTATAACCAGCAACCTTCTAACTACGGTCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGGAACAT
GGGGGGACCATATGGTGGAGGAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGGGGTTATGGTGGGAGG
AGCCGATACTGA

Translation (353 aa):
MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFS
SMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT
IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFG
DSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQG
GGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR
SRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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