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Report for CCDS43445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43445.1 Public Homo sapiens 6 CCHCR1 24 110 108 CCDS HistoryNCBI Gene:54535Re-query CCDS DB by CCDS ID:43445.1Re-query CCDS DB by GeneID:54535See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43445.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396268.8 ENSP00000379566.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396268.8Link to Ensembl Protein Viewer:ENSP00000379566.3Re-query CCDS DB by Nucleotide ID:ENST00000396268Re-query CCDS DB by Protein ID:ENSP00000379566
Original member Current member NCBI NM_001105564.2 NP_001099034.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001105564.2Link to Protein Sequence:NP_001099034.1Re-query CCDS DB by Nucleotide ID:NM_001105564Re-query CCDS DB by Protein ID:NP_001099034Link to BLAST:NP_001099034.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001099034.1 871 Q8TD31-2 871 100% 0 0

Chromosomal Locations for CCDS 43445.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31142592 31142716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31142963 31143134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31143262 31143413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31144687 31144788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31144885 31145073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31145166 31145302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31145448 31145493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31145696 31145808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31148405 31148511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31148618 31148728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31150066 31150215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31150455 31150565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31150725 31150860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31150959 31151122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31154496 31154799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31156731 31156944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31157023 31157089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31157385 31157600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2616 nt):
ATGTGGCCACATTCAGCTGGGGCCAGGCCTTGGGCCAGCACTTTAACAGGGAAGGACCCAAGAGTCATGG
CCTGCTGGTGTCTGGATGGGCTTCCCTCAGGCCTTGCTGAGCCATGGAGAGAACTCTGGAGATGGCGCTC
AAGACCCCTGCACTGTGTACCTCCTTTCTCACCTCTGGCCAGGAGCAGCAGGGACCATAGAAACTTAAGG
AGGAGGGGGAACATAGATGGCTGGAGACAGAATCTAGAGCCTTCAAATAATGTGGAGATGTTTCCACCTT
CAGGTTCCACTGGGCTGATTCCCCCCTCCCACTTTCAAGCTCGGCCCCTTTCAACTCTGCCAAGAATGGC
TCCCACCTGGCTCTCAGACATTCCCCTGGTCCAACCCCCAGGCCATCAAGATGTCTCAGAGAGGCGGCTA
GACACCCAGAGACCTCAAGTGACCATGTGGGAACGGGATGTTTCCAGTGACAGGCAGGAGCCAGGGCGGA
GAGGCAGGTCCTGGGGGCTGGAGGGGTCACAGGCCCTGAGCCAGCAGGCTGAGGTGATCGTTCGGCAGCT
GCAAGAGCTGCGGCGGCTGGAGGAGGAGGTCCGGCTCCTGCGGGAGACCTCGCTGCAGCAGAAGATGAGG
CTAGAGGCCCAGGCCATGGAGCTAGAGGCTCTGGCACGGGCGGAGAAGGCCGGCCGAGCTGAGGCTGAGG
GCCTGCGTGCTGCTTTGGCTGGGGCTGAGGTTGTCCGGAAGAACTTGGAAGAGGGGAGCCAGCGGGAGCT
GGAAGAGGTTCAGAGGCTGCACCAAGAGCAGCTGTCCTCTTTGACACAGGCTCACGAGGAGGCTCTTTCC
AGTTTGACCAGCAAGGCTGAGGGCTTGGAGAAGTCTCTGAGTAGTCTGGAAACCAGAAGAGCAGGGGAAG
CCAAGGAGCTGGCCGAGGCTCAGAGGGAGGCCGAGCTGCTTCGGAAGCAGCTGAGCAAGACCCAGGAAGA
CTTGGAGGCTCAGGTGACCCTGGTTGAGAATCTAAGAAAATATGTTGGGGAACAAGTGCCTTCTGAGGTC
CACAGCCAGACATGGGAACTGGAGCGACAGAAGCTTCTGGAAACCATGCAGCACTTGCAGGAGGACCGGG
ACAGCCTGCATGCCACCGCGGAGCTGCTGCAGGTGCGGGTGCAGAGCCTCACACACATCCTCGCCCTGCA
GGAGGAGGAGCTGACCAGGAAGGTTCAACCTTCAGATTCCCTGGAGCCTGAGTTTACCAGGAAGTGCCAG
TCCCTGCTGAACCGCTGGCGGGAGAAGGTGTTTGCCCTCATGGTGCAGCTAAAGGCCCAGGAGCTGGAAC
ACAGTGACTCTGTTAAGCAGCTGAAGGGACAGGTGGCCTCACTCCAGGAAAAAGTGACATCCCAGAGCCA
GGAGCAGGCCATCCTGCAGCGATCCCTGCAGGACAAAGCCGCAGAGGTGGAGGTGGAGCGTATGGGTGCC
AAGGGCCTGCAGTTGGAGCTGAGCCGTGCTCAGGAGGCCAGGCGTCGGTGGCAGCAGCAGACAGCCTCAG
CCGAGGAGCAGCTGAGGCTTGTGGTCAATGCTGTCAGCAGCTCTCAGATCTGGCTCGAGACCACCATGGC
TAAGGTGGAAGGGGCTGCCGCCCAGCTTCCCAGCCTCAACAACCGACTCAGCTATGCTGTCCGCAAGGTC
CACACCATTCGGGGCCTGATTGCTCGAAAGCTTGCCCTTGCTCAGCTGCGCCAGGAGAGCTGTCCCCTAC
CACCACCGGTCACAGACGTGAGCCTTGAGTTGCAGCAGTTGCGGGAAGAACGGAACCGCCTGGATGCAGA
ACTGCAGCTGAGTGCCCGCCTCATCCAGCAGGAGGTGGGCCGGGCTCGGGAGCAAGGGGAGGCAGAGCGG
CAGCAGCTGAGCAAGGTGGCCCAGCAGCTGGAGCAGGAGCTGCAGCAGACCCAGGAGTCCCTGGCTAGCT
TGGGGCTGCAGCTGGAGGTAGCACGCCAGGGCCAGCAGGAGAGCACAGAGGAGGCTGCCAGTCTGCGGCA
GGAGCTGACCCAGCAGCAGGAACTCTACGGGCAAGCCCTGCAAGAAAAGGTGGCTGAAGTGGAAACTCGG
CTGCGGGAGCAACTCTCAGACACAGAGAGGAGGCTGAACGAGGCTCGGAGGGAGCATGCCAAGGCCGTGG
TCTCCTTACGCCAGATTCAGCGCAGAGCCGCCCAGGAAAAGGAGCGGAGCCAGGAACTCAGGCGTCTGCA
GGAGGAGGCCCGGAAGGAGGAGGGGCAGCGACTGGCCCGGCGCTTGCAGGAGCTAGAGAGGGATAAGAAC
CTCATGCTGGCCACCTTGCAGCAGGAAGGTCTCCTCTCCCGTTACAAGCAGCAGCGACTGTTGACAGTTC
TTCCTTCCCTACTGGATAAGAAGAAATCTGTGGTGTCCAGCCCCAGGCCTCCAGAGTGTTCAGCATCTGC
ACCTGTAGCAGCAGCAGTGCCCACCAGGGAGTCCATAAAAGGGTCCCTCTCTGTCCTGCTCGATGACCTG
CAGGACCTGAGTGAAGCCATTTCCAAAGAGGAAGCTGTTTGTCAAGGAGACAACCTTGACAGATGCTCCA
GCTCCAATCCCCAGATGAGCAGCTAA

Translation (871 aa):
MWPHSAGARPWASTLTGKDPRVMACWCLDGLPSGLAEPWRELWRWRSRPLHCVPPFSPLARSSRDHRNLR
RRGNIDGWRQNLEPSNNVEMFPPSGSTGLIPPSHFQARPLSTLPRMAPTWLSDIPLVQPPGHQDVSERRL
DTQRPQVTMWERDVSSDRQEPGRRGRSWGLEGSQALSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMR
LEAQAMELEALARAEKAGRAEAEGLRAALAGAEVVRKNLEEGSQRELEEVQRLHQEQLSSLTQAHEEALS
SLTSKAEGLEKSLSSLETRRAGEAKELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVGEQVPSEV
HSQTWELERQKLLETMQHLQEDRDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEFTRKCQ
SLLNRWREKVFALMVQLKAQELEHSDSVKQLKGQVASLQEKVTSQSQEQAILQRSLQDKAAEVEVERMGA
KGLQLELSRAQEARRRWQQQTASAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKV
HTIRGLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEAER
QQLSKVAQQLEQELQQTQESLASLGLQLEVARQGQQESTEEAASLRQELTQQQELYGQALQEKVAEVETR
LREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKERSQELRRLQEEARKEEGQRLARRLQELERDKN
LMLATLQQEGLLSRYKQQRLLTVLPSLLDKKKSVVSSPRPPECSASAPVAAAVPTRESIKGSLSVLLDDL
QDLSEAISKEEAVCQGDNLDRCSSSNPQMSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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