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Report for CCDS43011.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43011.1 Public Homo sapiens 22 RFPL3 24 110 108 CCDS HistoryNCBI Gene:10738Re-query CCDS DB by CCDS ID:43011.1Re-query CCDS DB by GeneID:10738See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43011.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000249007.4 ENSP00000249007.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000249007.4Link to Ensembl Protein Viewer:ENSP00000249007.4Re-query CCDS DB by Nucleotide ID:ENST00000249007Re-query CCDS DB by Protein ID:ENSP00000249007
Original member Current member NCBI NM_001098535.1 NP_001092005.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098535.1Link to Protein Sequence:NP_001092005.1Re-query CCDS DB by Nucleotide ID:NM_001098535Re-query CCDS DB by Protein ID:NP_001092005Link to BLAST:NP_001092005.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092005.1 317 O75679-1 317 100% 0 0

Chromosomal Locations for CCDS 43011.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 32358072 32358444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32360252 32360832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGAAAAGGTTGTCACTTGTCACAACTAACAGGCTTTCACCTCAAGGAAATTTTCTTCCCTTGTGTACTT
TTCCCCTGGCAGTGGACATGGCTGCACTCTTCCAAGAAGCAAGCAGCTGTCCCGTCTGCTCAGACTATCT
GGAAAAACCAATGTCCCTGGAGTGTGGATGCACCGTCTGCCTCAAGTGCATCAATTCGCTGCAGAAGGAG
CCCCATGGGGAGGATCTGCTTTGCTGTTGCTGTTCCATGGTCTCTCAGAGGAACAAAATCAGGCCCAATC
GGCAGCTAGAGAGGCTGGTTTCCCACATCAAGGAACTGGAGCCCAAGCTGAAGAAGATTCTACAGATGAA
CCCAAGGATGCGGAAGTTCCAAGTGGATATGACCTTGGATGCCGACACAGCCAACAACTTCCTCCTCATT
TCTGACGACCTCAGGAGCGTCCGAAGTGGGCTCATCACACAGAATCGGCAAGACCTTGCCGAGAGATTTG
ACGTGTCCGTTTGCATCCTGGGCTCCCCTCGCTTTACCTGTGGCCGCCACTACTGGGAGGTGGACGTGGG
AACAAGCACAGAATGGGACCTGGGAGTCTGCAGAGAATCTGTTCACTGCAAAGGGAAGATCCAGCTGACC
ACAGAGCTTGGATTCTGGACTGTGAGTTTGAGGGATGGAAGCCGCCTCTCTGCCAGCACGGTGCCGCTGA
CTTTCCTCTTAGTAGACCGCAAGTTACAGCGAGTGGGGATTTTTCTGGATATGGGCATGCAGAACGTTTC
CTTTTTTGATGCTGAAAGTGGTTCCCATGTCTATACATTCAGGAGCGTCTCTGCTGAGGAGCCACTGCGC
CCATTTTTGGCTCCTTCAATTCCACCTAATGGTGATCAAGGTGTCTTGAGCATCTGTCCTTTGATGAACT
CAGGCACTACTGATGCTCCAGTCCGTCCTGGGGAGGCCAAATAA

Translation (317 aa):
MKRLSLVTTNRLSPQGNFLPLCTFPLAVDMAALFQEASSCPVCSDYLEKPMSLECGCTVCLKCINSLQKE
PHGEDLLCCCCSMVSQRNKIRPNRQLERLVSHIKELEPKLKKILQMNPRMRKFQVDMTLDADTANNFLLI
SDDLRSVRSGLITQNRQDLAERFDVSVCILGSPRFTCGRHYWEVDVGTSTEWDLGVCRESVHCKGKIQLT
TELGFWTVSLRDGSRLSASTVPLTFLLVDRKLQRVGIFLDMGMQNVSFFDAESGSHVYTFRSVSAEEPLR
PFLAPSIPPNGDQGVLSICPLMNSGTTDAPVRPGEAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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