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Report for CCDS42863.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42863.1 Public Homo sapiens 20 TTLL9 24 110 108 CCDS HistoryNCBI Gene:164395Re-query CCDS DB by CCDS ID:42863.1Re-query CCDS DB by GeneID:164395See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 42863.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375938.8 ENSP00000365105.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375938.8Link to Ensembl Protein Viewer:ENSP00000365105.4Re-query CCDS DB by Nucleotide ID:ENST00000375938Re-query CCDS DB by Protein ID:ENSP00000365105
Original member Current member EBI ENST00000535842.6 ENSP00000442515.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000535842.6Link to Ensembl Protein Viewer:ENSP00000442515.1Re-query CCDS DB by Nucleotide ID:ENST00000535842Re-query CCDS DB by Protein ID:ENSP00000442515
Original member Current member NCBI NM_001008409.5 NP_001008409.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008409.5Link to Protein Sequence:NP_001008409.1Re-query CCDS DB by Nucleotide ID:NM_001008409Re-query CCDS DB by Protein ID:NP_001008409Link to BLAST:NP_001008409.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008409.1 439 Q3SXZ7-1 439 100% 0 0

Chromosomal Locations for CCDS 42863.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 31871127 31871195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31887196 31887239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31898473 31898565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31908591 31908702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31909737 31909922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31919864 31919932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31922963 31923053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31925009 31925049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31926049 31926091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31933800 31933858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31934692 31934888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31937396 31937509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31939142 31939266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31942945 31943021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGGTGCCATCCAGGGAAGCTCTGCTGGGACCAGGCACAACTGCCATTAGGTGCCCCAAGAAATTACAGA
ACCAAAATTACAAGGGCCATGGATTGTCAAAGGGAAAAGAGCGAGAGCAGAGAGCATCGATCCGGTTCAA
GACCACCCTCATGAACACACTCATGGACGTCCTTCGCCACAGGCCAGGATGGGTGGAAGTGAAGGACGAA
GGGGAGTGGGATTTCTACTGGTGTGACGTCAGCTGGCTCCGGGAGAACTTCGACCACACCTACATGGATG
AACATGTGCGGATCAGTCACTTCCGGAACCACTATGAGCTGACCCGGAAGAACTACATGGTGAAGAACCT
GAAGCGGTTCCGGAAGCAGCTGGAGCGTGAGGCAGGAAAGCTGGAGGCAGCCAAGTGTGACTTCTTCCCC
AAAACCTTTGAGATGCCTTGCGAGTACCACCTGTTTGTAGAGGAGTTTCGCAAAAACCCAGGAATCACCT
GGATCATGAAGCCTGTAGCCCGGTCTCAAGGGAAAGGCATCTTCCTCTTCCGTAGGCTGAAGGACATCGT
GGACTGGAGGAAGGACACAAGAAGCTCTGACGACCAGAAAGATGATATTCCCGTGGAGAACTATGTGGCT
CAGCGTTACATTGAAAATCCTTACCTGATAGGAGGCCGCAAGTTTGACCTGCGTGTCTATGTGCTGGTGA
TGTCGGTGTTTGCTGAATGCCTGCTGTGGTCTGGGCACAGGAGACAGGATGTTCACCTCACCAACGTGGC
TGTGCAAAAAACATCTCCCGACTACCACCCAAAGAAGGGCTGCAAGTGGACGCTGCAGCGCTTCCGGCAG
TACCTGGCGTCCAAACACGGGCCCGAGGCAGTGGAGACACTCTTCAGGGACATCGACAACATCTTTGTCA
AAAGCCTGCAGAGTGTGCAGAAGGTGATCATCAGTGACAAGCACTGCTTCGAGCTGTACGGCTATGACAT
CCTCATCGACCAGGACCTCAAGCCGTGGCTCCTGGAGGTCAATGCGTCCCCATCACTGACAGCCAGCAGC
CAGGAAGACTATGAGCTCAAGACCTGCCTCCTGGAAGACACCCTGCATGTTGTGGACATGGAAGCGAGGC
TCACGGGAAGGGAGAAGCGAGTCGGGGGCTTTGACCTCATGTGGAATGATGGCCCTGTTAGCAGAGAGGA
GGGGGCTCCTGACCTGTCGGGAATGGGAAACTTTGTGACCAACACACATCTCGGCTGCGTCAACGATCGG
AAGAAACAACTGAGGCAGCTCTTCTGCTCCCTTCAAGTTCAGAAGAAAGCTTCCAGTTGA

Translation (439 aa):
MVPSREALLGPGTTAIRCPKKLQNQNYKGHGLSKGKEREQRASIRFKTTLMNTLMDVLRHRPGWVEVKDE
GEWDFYWCDVSWLRENFDHTYMDEHVRISHFRNHYELTRKNYMVKNLKRFRKQLEREAGKLEAAKCDFFP
KTFEMPCEYHLFVEEFRKNPGITWIMKPVARSQGKGIFLFRRLKDIVDWRKDTRSSDDQKDDIPVENYVA
QRYIENPYLIGGRKFDLRVYVLVMSVFAECLLWSGHRRQDVHLTNVAVQKTSPDYHPKKGCKWTLQRFRQ
YLASKHGPEAVETLFRDIDNIFVKSLQSVQKVIISDKHCFELYGYDILIDQDLKPWLLEVNASPSLTASS
QEDYELKTCLLEDTLHVVDMEARLTGREKRVGGFDLMWNDGPVSREEGAPDLSGMGNFVTNTHLGCVNDR
KKQLRQLFCSLQVQKKASS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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