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Report for CCDS42810.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42810.1 Public Homo sapiens 2 RPE 24 110 108 CCDS HistoryNCBI Gene:6120Re-query CCDS DB by CCDS ID:42810.1Re-query CCDS DB by GeneID:6120See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42810.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000454822.5 ENSP00000394455.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000454822.5Link to Ensembl Protein Viewer:ENSP00000394455.1Re-query CCDS DB by Nucleotide ID:ENST00000454822Re-query CCDS DB by Protein ID:ENSP00000394455
Original member Current member EBI ENST00000429921.5 ENSP00000401838.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429921.5Link to Ensembl Protein Viewer:ENSP00000401838.1Re-query CCDS DB by Nucleotide ID:ENST00000429921Re-query CCDS DB by Protein ID:ENSP00000401838
Original member Current member EBI ENST00000436630.6 ENSP00000403808.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000436630.6Link to Ensembl Protein Viewer:ENSP00000403808.2Re-query CCDS DB by Nucleotide ID:ENST00000436630Re-query CCDS DB by Protein ID:ENSP00000403808
Original member Current member NCBI NM_001278282.2 NP_001265211.1 Accepted alive Link to Nucleotide Sequence:NM_001278282.2Link to Protein Sequence:NP_001265211.1Re-query CCDS DB by Nucleotide ID:NM_001278282Re-query CCDS DB by Protein ID:NP_001265211Link to BLAST:NP_001265211.1
Original member Current member NCBI NM_001278283.2 NP_001265212.1 Accepted alive Link to Nucleotide Sequence:NM_001278283.2Link to Protein Sequence:NP_001265212.1Re-query CCDS DB by Nucleotide ID:NM_001278283Re-query CCDS DB by Protein ID:NP_001265212Link to BLAST:NP_001265212.1
Original member Current member NCBI NM_006916.3 NP_008847.1 Accepted alive Link to Nucleotide Sequence:NM_006916.3Link to Protein Sequence:NP_008847.1Re-query CCDS DB by Nucleotide ID:NM_006916Re-query CCDS DB by Protein ID:NP_008847Link to BLAST:NP_008847.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265211.1 178 Q96AT9-3 178 100% 0 0
NP_001265212.1 178 Q96AT9-3 178 100% 0 0
NP_008847.1 178 Q96AT9-3 178 100% 0 0

Chromosomal Locations for CCDS 42810.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 210015975 210016112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 210016204 210016257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 210016507 210016641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 210017473 210017559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 210019669 210019791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGCACATGATGGTGTCCAAGCCAGAACAGTGGGTAAAGCCAATGGCTGTAGCAGGAGCCAATCAGTACA
CCTTTCATCTCGAGGCTACTGAGAACCCAGGGGCTTTGATTAAAGACATTCGGGAGAATGGGATGAAGTC
TTGCTCTGTCACCCAGGCTGAAGTGCAGTGGCACAGTCAGGGCCCATTGCAGGTTGGCCTTGCCATCAAA
CCAGGAACCTCAGTTGAGTATTTGGCACCATGGGCTAATCAGATAGATATGGCCTTGGTTATGACAGTGG
AACCGGGGTTTGGAGGGCAGAAATTCATGGAAGATATGATGCCAAAGGTTCACTGGTTGAGGACCCAGTT
CCCATCTTTGGATATAGAGGTCGATGGTGGAGTAGGTCCTGACACTGTCCATAAATGTGCAGAGGCAGGA
GCTAACATGATTGTGTCTGGCAGTGCTATTATGAGGAGTGAAGACCCCAGATCTGTGATCAATCTATTAA
GAAATGTTTGCTCAGAAGCTGCTCAGAAACGTTCTCTTGATCGGTGA

Translation (178 aa):
MHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKSCSVTQAEVQWHSQGPLQVGLAIK
PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAG
ANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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