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Report for CCDS42714.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42714.1 Public Homo sapiens 2 GPAT2 24 110 108 CCDS HistoryNCBI Gene:150763Re-query CCDS DB by CCDS ID:42714.1Re-query CCDS DB by GeneID:150763See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42714.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359548.8 ENSP00000352547.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359548.8Link to Ensembl Protein Viewer:ENSP00000352547.4Re-query CCDS DB by Nucleotide ID:ENST00000359548Re-query CCDS DB by Protein ID:ENSP00000352547
Original member Current member EBI ENST00000691940.1 ENSP00000509624.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691940.1Link to Ensembl Protein Viewer:ENSP00000509624.1Re-query CCDS DB by Nucleotide ID:ENST00000691940Re-query CCDS DB by Protein ID:ENSP00000509624
Original member Current member NCBI NM_207328.4 NP_997211.2 Accepted alive Link to Nucleotide Sequence:NM_207328.4Link to Protein Sequence:NP_997211.2Re-query CCDS DB by Nucleotide ID:NM_207328Re-query CCDS DB by Protein ID:NP_997211Link to BLAST:NP_997211.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997211.2 795 Q6NUI2-1 795 100% 0 0

Chromosomal Locations for CCDS 42714.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 96022159 96022275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96022668 96022723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96022958 96023023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96023106 96023226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96023309 96023440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96023923 96024000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96024189 96024337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96024427 96024667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96024773 96024843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96025485 96025603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96025930 96026012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96026183 96026305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96026697 96026909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96027007 96027106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96027419 96027552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96027991 96028090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96030406 96030534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96030744 96030848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96031261 96031334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96032033 96032146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96032297 96032359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2388 nt):
ATGGCCACCATGTTGGAAGGCAGATGCCAAACTCAGCCAAGGAGCAGCCCCAGTGGCCGAGAGGCTAGCC
TGTGGTCGTCAGGCTTTGGGATGAAGCTGGAGGCTGTCACTCCATTCCTGGGGAAGTATCGCCCCTTTGT
GGGTCGCTGTTGCCAGACCTGCACCCCCAAGAGCTGGGAGTCCCTCTTCCACAGAAGCATAACGGACCTA
GGCTTCTGCAATGTGATCCTGGTGAAGGAGGAGAACACAAGGTTTCGGGGCTGGCTGGTTCGGAGGCTCT
GCTATTTCCTGTGGTCCCTGGAGCAGCACATCCCCCCCTGCCAGGATGTCCCACAGAAGATCATGGAAAG
CACCGGGGTGCAGAACCTCCTCTCAGGGAGGGTCCCAGGAGGCACTGGGGAAGGCCAGGTGCCTGACCTT
GTGAAGAAGGAGGTACAGCGCATCCTGGGTCACATCCAGGCCCCACCCCGTCCCTTCCTGGTCAGGCTGT
TCAGCTGGGCGCTGCTGAGGTTCCTGAACTGCCTGTTCCTGAATGTGCAGCTCCACAAGGGTCAGATGAA
GATGGTCCAGAAGGCCGCCCAGGCAGGCTTGCCGCTTGTCCTCCTCTCTACTCACAAAACCCTCCTGGAT
GGGATCCTGCTGCCCTTTATGCTGCTCTCCCAGGGCCTGGGTGTGCTTCGTGTGGCCTGGGACTCCCGCG
CCTGCTCCCCTGCCCTCAGAGCTCTGCTGAGGAAGCTTGGGGGGCTTTTCCTGCCCCCAGAGGCCAGCCT
CTCCCTGGACAGCTCTGAGGGGCTCCTTGCCAGGGCTGTGGTCCAGGCGGTCATAGAGCAGCTGCTGGTT
AGTGGGCAGCCCCTGCTCATCTTCCTGGAGGAACCTCCTGGGGCTCTGGGGCCACGGCTGTCAGCCCTGG
GCCAGGCTTGGGTGGGGTTTGTGGTGCAGGCAGTCCAGGTGGGCATCGTCCCAGATGCTCTGCTGGTACC
AGTGGCCGTCACCTATGACCTGGTTCCGGATGCACCGTGTGACATAGACCATGCCTCGGCCCCCCTGGGG
CTGTGGACAGGAGCTCTGGCTGTCCTACGTAGCTTGTGGAGCCGCTGGGGCTGCAGCCACCGGATCTGCT
CCCGGGTGCACCTAGCTCAGCCCTTTTCCCTGCAGGAATACATCGTCAGTGCCAGAAGCTGCTGGGGCGG
CAGACAGACCCTGGAGCAGCTACTGCAGCCCATCGTGCTGGGCCAATGTACTGCTGTCCCAGACACTGAG
AAGGAGCAGGAGTGGACCCCCATAACTGGGCCTCTCCTGGCCCTCAAGGAAGAGGACCAGCTCCTGGTCA
GGAGACTGAGCTGTCATGTCCTGAGTGCCAGTGTAGGGAGCTCTGCGGTGATGAGCACGGCCATTATGGC
AACGCTGCTGCTCTTCAAGCATCAGAAGCTCCTGGGGGAGTTCTCCTGGCTGACGGAGGAGATACTGTTG
CGTGGCTTTGATGTAGGCTTCTCTGGGCAGCTGCGGAGCCTGCTGCAGCACTCACTGAGCCTGCTGCGGG
CGCACGTGGCCCTGCTGCGCATCCGTCAGGGTGACTTGCTGGTGGTGCCGCAGCCTGGCCCAGGCCTCAC
ACACCTGGCACAACTGAGTGCTGAGCTGCTGCCCGTCTTCCTGAGCGAGGCTGTGGGCGCCTGTGCAGTG
CGGGGGCTGCTGGCAGGCAGAGTGCCGCCCCAGGGGCCCTGGGAGCTGCAGGGCATATTGCTGCTGAGCC
AGAATGAGCTGTACCGCCAGATCCTGCTGCTGATGCACCTGCTGCCGCAAGACCTGCTGCTGCTAAAGCC
CTGCCAGTCTTCCTACTGCTACTGTCAGGAGGTGCTGGACCGGCTCATCCAATGCGGGCTCCTGGTTGCT
GAGGAGACCCCAGGCTCCCGGCCAGCCTGTGACACAGGGCGACAGCGATTGAGCAGAAAGCTGCTGTGGA
AACCGAGTGGGGACTTTACTGATAGTGACAGTGATGACTTCGGAGAGGCTGACGGCCGGTACTTCAGGCT
CAGCCAGCAGTCACACTGCCCAGATTTCTTTCTTTTCCTCTGCCGCCTGCTCAGCCCGCTGCTCAAGGCC
TTTGCACAGGCTGCCGCCTTCCTCCGCCAGGGCCAGCTGCCCGATACTGAGTTGGGCTACACAGAGCAGC
TGTTCCAGTTCCTGCAGGCCACCGCCCAGGAAGAAGGGATCTTCGAGTGTGCGGACCCAAAGCTCGCCAT
CAGTGCTGTCTGGACCTTCAGAGACCTAGGGGTTCTGCAGCAGACGCCGAGCCCTGCAGGCCCCAGGCTC
CACCTGTCCCCTACTTTTGCCAGCCTGGACAATCAGGAAAAACTAGAACAGTTCATCCGGCAGTTCATTT
GTAGCTAG

Translation (795 aa):
MATMLEGRCQTQPRSSPSGREASLWSSGFGMKLEAVTPFLGKYRPFVGRCCQTCTPKSWESLFHRSITDL
GFCNVILVKEENTRFRGWLVRRLCYFLWSLEQHIPPCQDVPQKIMESTGVQNLLSGRVPGGTGEGQVPDL
VKKEVQRILGHIQAPPRPFLVRLFSWALLRFLNCLFLNVQLHKGQMKMVQKAAQAGLPLVLLSTHKTLLD
GILLPFMLLSQGLGVLRVAWDSRACSPALRALLRKLGGLFLPPEASLSLDSSEGLLARAVVQAVIEQLLV
SGQPLLIFLEEPPGALGPRLSALGQAWVGFVVQAVQVGIVPDALLVPVAVTYDLVPDAPCDIDHASAPLG
LWTGALAVLRSLWSRWGCSHRICSRVHLAQPFSLQEYIVSARSCWGGRQTLEQLLQPIVLGQCTAVPDTE
KEQEWTPITGPLLALKEEDQLLVRRLSCHVLSASVGSSAVMSTAIMATLLLFKHQKLLGEFSWLTEEILL
RGFDVGFSGQLRSLLQHSLSLLRAHVALLRIRQGDLLVVPQPGPGLTHLAQLSAELLPVFLSEAVGACAV
RGLLAGRVPPQGPWELQGILLLSQNELYRQILLLMHLLPQDLLLLKPCQSSYCYCQEVLDRLIQCGLLVA
EETPGSRPACDTGRQRLSRKLLWKPSGDFTDSDSDDFGEADGRYFRLSQQSHCPDFFLFLCRLLSPLLKA
FAQAAAFLRQGQLPDTELGYTEQLFQFLQATAQEEGIFECADPKLAISAVWTFRDLGVLQQTPSPAGPRL
HLSPTFASLDNQEKLEQFIRQFICS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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