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Report for CCDS42639.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42639.1 Public Homo sapiens 19 ZNF154 24 110 108 CCDS HistoryNCBI Gene:7710Re-query CCDS DB by CCDS ID:42639.1Re-query CCDS DB by GeneID:7710See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42639.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000512439.6 ENSP00000421258.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512439.6Link to Ensembl Protein Viewer:ENSP00000421258.2Re-query CCDS DB by Nucleotide ID:ENST00000512439Re-query CCDS DB by Protein ID:ENSP00000421258
Original member Current member EBI ENST00000451275.1 ENSP00000469633.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000451275.1Link to Ensembl Protein Viewer:ENSP00000469633.1Re-query CCDS DB by Nucleotide ID:ENST00000451275Re-query CCDS DB by Protein ID:ENSP00000469633
Original member Current member EBI ENST00000684351.1 ENSP00000507206.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000684351.1Link to Ensembl Protein Viewer:ENSP00000507206.1Re-query CCDS DB by Nucleotide ID:ENST00000684351Re-query CCDS DB by Protein ID:ENSP00000507206
Original member Current member NCBI NM_001085384.3 NP_001078853.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001085384.3Link to Protein Sequence:NP_001078853.1Re-query CCDS DB by Nucleotide ID:NM_001085384Re-query CCDS DB by Protein ID:NP_001078853Link to BLAST:NP_001078853.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078853.1 437 Q13106 437 100% 0 0

Chromosomal Locations for CCDS 42639.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57701635 57702788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57704853 57704979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57708939 57708971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGGCAGCGGCCACTCTGAGGACGCCAACTCAGGGCACTGTGACCTTTGAAGATGTGGCCGTACACTTCT
CCTGGGAGGAATGGGGTCTCCTTGATGAGGCTCAAAGATGCCTGTACCGTGATGTGATGCTGGAGAACTT
GGCTCTTTTAACCTCTCTAGATGTTCATCATCAGAAGCAGCACCTTGGAGAAAAACATTTCAGAAGCAAT
GTGGGCAGAGCCTTGTTTGTGAAGACCTGCACATTCCATGTGTCAGGGGAGCCTTCCACCTGCAGAGAAG
TTGGGAAGGACTTCCTGGCCAAGTTGGGATTTCTCCATCAACAGGCTGCTCACACTGGGGAGCAATCAAA
TAGCAAAAGCGACGGTGGGGCCATCAGTCACAGAGGAAAAACTCATTACAACTGTGGAGAACACACAAAA
GCATTCAGCGGTAAACACACACTTGTTCAGCAGCAGAGAACCCTCACTACAGAAAGATGTTACATATGCA
GTGAATGTGGGAAATCCTTTAGCAAAAGCTACAGTCTCAATGACCATTGGAGACTTCACACTGGAGAAAA
GCCTTATGAATGTCGAGAGTGTGGGAAGTCCTTTAGGCAAAGCTCTAGTCTCATTCAGCACCGGAGAGTT
CACACTGCAGTACGACCTCATGAATGTGATGAATGTGGAAAATTATTTAGCAACAAGTCTAACCTCATTA
AACATCGGAGAGTTCACACTGGGGAAAGGCCATATGAGTGCAGTGAATGTGGGAAATCCTTTAGCCAAAG
GTCTGCACTCCTTCAACATCGGGGAGTTCACACTGGGGAGAGGCCTTATGAGTGCAGTGAATGTGGGAAG
TTTTTTACATATCATTCCAGTCTCATAAAACACCAGAAAGTTCACAGTGGATCCAGGCCTTATGAGTGCA
GCGAATGTGGGAAGTCATTTAGCCAAAACTCTAGCCTCATTGAACACCATAGGGTTCACACTGGAGAAAG
GCCTTATAAGTGCAGCGAATGTGGGAAATCCTTTAGCCAAAGGTCTGCACTCCTTCAACATCGGGGAGTT
CACACTGGGGAGAGGCCTTATGAGTGCAGTGAATGTGGGAAGTTCTTTCCCTACAGCTCCAGTCTCCGAA
AACACCAGAGAGTTCACACTGGATCAAGACCCTATGAGTGCAGTGAATGTGGGAAATCCTTTACTCAAAA
TTCCGGCCTCATTAAGCACAGGAGGGTTCACACTGGGGAGAAGCCTTATGAGTGCACGGAATGTGGGAAA
TCCTTTAGCCATAACTCCAGCCTTATTAAACATCAGAGAATTCATAGTCGATAA

Translation (437 aa):
MAAATLRTPTQGTVTFEDVAVHFSWEEWGLLDEAQRCLYRDVMLENLALLTSLDVHHQKQHLGEKHFRSN
VGRALFVKTCTFHVSGEPSTCREVGKDFLAKLGFLHQQAAHTGEQSNSKSDGGAISHRGKTHYNCGEHTK
AFSGKHTLVQQQRTLTTERCYICSECGKSFSKSYSLNDHWRLHTGEKPYECRECGKSFRQSSSLIQHRRV
HTAVRPHECDECGKLFSNKSNLIKHRRVHTGERPYECSECGKSFSQRSALLQHRGVHTGERPYECSECGK
FFTYHSSLIKHQKVHSGSRPYECSECGKSFSQNSSLIEHHRVHTGERPYKCSECGKSFSQRSALLQHRGV
HTGERPYECSECGKFFPYSSSLRKHQRVHTGSRPYECSECGKSFTQNSGLIKHRRVHTGEKPYECTECGK
SFSHNSSLIKHQRIHSR


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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