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Report for CCDS42546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42546.1 Public Homo sapiens 19 GRAMD1A 24 110 108 CCDS HistoryNCBI Gene:57655Re-query CCDS DB by CCDS ID:42546.1Re-query CCDS DB by GeneID:57655See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42546.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317991.10 ENSP00000441032.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317991.10Link to Ensembl Protein Viewer:ENSP00000441032.1Re-query CCDS DB by Nucleotide ID:ENST00000317991Re-query CCDS DB by Protein ID:ENSP00000441032
Original member Current member NCBI NM_020895.5 NP_065946.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020895.5Link to Protein Sequence:NP_065946.2Re-query CCDS DB by Nucleotide ID:NM_020895Re-query CCDS DB by Protein ID:NP_065946Link to BLAST:NP_065946.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065946.2 724 Q96CP6-1 724 100% 0 0

Chromosomal Locations for CCDS 42546.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 35000479 35000486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35009119 35009329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35009423 35009443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35009888 35009972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35010092 35010195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35010284 35010379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35011474 35011554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35013256 35013368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35013541 35013691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35014189 35014387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35015824 35015967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35019191 35019309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35019391 35019533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35021502 35021605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35021691 35021864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35021951 35022038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35022900 35022911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35023236 35023343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35023427 35023547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35026049 35026141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2175 nt):
ATGTTCGACACCACACCCCACTCTGGCCGGAGCACGCCAAGCAGCTCCCCATCGCTCCGGAAACGGCTGC
AGCTCCTGCCCCCAAGCCGGCCCCCACCTGAGCCAGAACCAGGCACCATGGTGGAGAAGGGATCAGATAG
CTCCTCAGAGAAGGGTGGGGTGCCTGGGACCCCCAGCACCCAGAGCCTAGGCAGCCGGAACTTCATCCGC
AACAGCAAGAAGATGCAGAGCTGGTACAGTATGCTGAGCCCCACTTATAAGCAGCGTAATGAGGACTTCC
GGAAACTGTTCAGCAAACTCCCCGAAGCAGAACGCCTCATTGTGGATTACTCCTGCGCCCTGCAGCGTGA
GATCCTGCTCCAGGGCCGCCTCTACCTCTCTGAGAACTGGATCTGCTTCTACAGCAACATCTTCCGCTGG
GAGACCACGATCTCCATCCAGCTGAAGGAAGTGACATGTCTGAAGAAGGAAAAGACGGCCAAGCTGATCC
CCAACGCCATCCAGATCTGCACGGAGAGCGAGAAGCATTTCTTCACTTCCTTTGGGGCCCGTGACCGCTG
CTTCCTCCTCATCTTCCGCCTCTGGCAGAATGCACTGCTTGAAAAGACGCTGAGTCCCCGCGAGCTCTGG
CACCTGGTGCATCAGTGCTACGGCTCAGAGCTGGGCCTCACCAGTGAGGATGAGGACTATGTCTCCCCCT
TGCAGCTGAACGGTCTGGGGACCCCCAAGGAAGTGGGAGATGTGATCGCCCTGAGCGACATCACCTCCTC
GGGGGCAGCTGACCGCAGCCAGGAGCCAAGCCCAGTGGGTTCGCGCCGTGGCCATGTCACGCCCAACCTT
TCCCGAGCCAGCAGCGACGCAGACCATGGGGCAGAGGAGGACAAGGAGGAGCAGGTAGACAGCCAGCCAG
ACGCCTCCTCCAGCCAGACAGTGACCCCGGTGGCTGAACCCCCGAGCACAGAGCCCACCCAGCCTGACGG
GCCCACCACCCTGGGCCCCTTGGATCTGCTGCCCAGTGAGGAGCTATTGACAGACACAAGTAACTCCTCT
TCATCCACTGGGGAGGAAGCGGACTTGGCTGCCCTGCTTCCCGACCTCTCCGGCCGCCTCCTCATCAACT
CTGTCTTCCATGTGGGCGCTGAGCGGCTCCAGCAGATGCTCTTCTCGGACTCGCCCTTCCTCCAGGGCTT
CCTACAGCAGTGCAAGTTCACAGACGTGACGCTGAGCCCCTGGAGTGGGGACAGCAAGTGCCACCAGCGC
CGGGTGCTGACGTACACCATCCCCATCAGCAACCCACTGGGCCCCAAGAGCGCCTCCGTGGTGGAGACAC
AGACGCTGTTCCGGCGCGGCCCCCAGGCCGGCGGGTGTGTGGTGGACTCCGAGGTGCTGACGCAGGGCAT
CCCCTACCAGGACTACTTCTACACTGCCCACCGCTACTGCATCCTGGGTCTGGCCCGGAACAAGGCGCGG
CTCCGAGTGTCTTCTGAGATCCGCTACCGAAAGCAGCCGTGGAGCCTGGTGAAGTCGCTCATTGAGAAGA
ACTCGTGGAGCGGCATTGAAGACTATTTCCACCATCTGGAGCGAGAGCTCGCCAAGGCTGAGAAGCTGTC
TCTGGAGGAAGGCGGGAAGGATGCCCGGGGCTTGCTATCCGGCCTGCGGCGGCGGAAGCGGCCCCTGAGC
TGGCGGGCTCACGGGGACGGGCCCCAGCACCCAGATCCTGACCCCTGTGCCCGGGCCGGCATTCACACCT
CGGGCTCCCTCAGCTCCCGCTTCTCCGAACCATCTGTGGACCAGGGCCCCGGGGCAGGCATCCCCAGTGC
CCTGGTTCTCATCAGCATTGTGATCTGTGTGAGCCTTATCATCCTCATCGCCCTCAACGTCCTGCTCTTC
TACCGCCTCTGGTCCCTGGAAAGGACAGCCCACACCTTTGAGTCCTGGCACAGCCTGGCCCTGGCCAAGG
GCAAGTTCCCCCAGACGGCCACAGAGTGGGCCGAGATCCTGGCGCTGCAGAAGCAATTCCACAGCGTGGA
GGTGCACAAGTGGAGGCAGATCCTGCGGGCCTCCGTGGAGCTCCTGGATGAGATGAAGTTCTCGCTGGAG
AAGCTGCACCAAGGCATCACAGTCTCAGACCCTCCCTTTGACACCCAGCCCCGGCCCGATGACAGCTTTT
CCTGA

Translation (724 aa):
MFDTTPHSGRSTPSSSPSLRKRLQLLPPSRPPPEPEPGTMVEKGSDSSSEKGGVPGTPSTQSLGSRNFIR
NSKKMQSWYSMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYSNIFRW
ETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRLWQNALLEKTLSPRELW
HLVHQCYGSELGLTSEDEDYVSPLQLNGLGTPKEVGDVIALSDITSSGAADRSQEPSPVGSRRGHVTPNL
SRASSDADHGAEEDKEEQVDSQPDASSSQTVTPVAEPPSTEPTQPDGPTTLGPLDLLPSEELLTDTSNSS
SSTGEEADLAALLPDLSGRLLINSVFHVGAERLQQMLFSDSPFLQGFLQQCKFTDVTLSPWSGDSKCHQR
RVLTYTIPISNPLGPKSASVVETQTLFRRGPQAGGCVVDSEVLTQGIPYQDYFYTAHRYCILGLARNKAR
LRVSSEIRYRKQPWSLVKSLIEKNSWSGIEDYFHHLERELAKAEKLSLEEGGKDARGLLSGLRRRKRPLS
WRAHGDGPQHPDPDPCARAGIHTSGSLSSRFSEPSVDQGPGAGIPSALVLISIVICVSLIILIALNVLLF
YRLWSLERTAHTFESWHSLALAKGKFPQTATEWAEILALQKQFHSVEVHKWRQILRASVELLDEMKFSLE
KLHQGITVSDPPFDTQPRPDDSFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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