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Report for CCDS42535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42535.1 Public Homo sapiens 19 ZNF626 24 110 108 CCDS HistoryNCBI Gene:199777Re-query CCDS DB by CCDS ID:42535.1Re-query CCDS DB by GeneID:199777See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42535.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000601440.6 ENSP00000469958.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000601440.6Link to Ensembl Protein Viewer:ENSP00000469958.1Re-query CCDS DB by Nucleotide ID:ENST00000601440Re-query CCDS DB by Protein ID:ENSP00000469958
Original member Current member NCBI NM_001076675.3 NP_001070143.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001076675.3Link to Protein Sequence:NP_001070143.1Re-query CCDS DB by Nucleotide ID:NM_001076675Re-query CCDS DB by Protein ID:NP_001070143Link to BLAST:NP_001070143.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070143.1 528 Q68DY1-1 528 100% 0 0

Chromosomal Locations for CCDS 42535.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 20624290 20625650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20645684 20645779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20646279 20646405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20661444 20661446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGGGACCATTGCAATTTAGAGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCATTGCCTGGACACTG
CACAGCGGAATTTATATAGGAATGTGATGTTAGAGAACTACAGTAACCTGGTCTTCCTTGGTATTACTGT
TTCTAAGCCAGACCTGATCACCTGTCTGGAGCAAGGAAGAAAACCTTTGACCATGAAGAGAAATGAGATG
ATAGCCAAACCCTCAGTAATGTGTTCTCATTTTGCCCAAGACCTTTGGCCAGAGCAGAGCATGAAAGATT
CTTTCCAAAAAGTGGTACTGAGAAGATATGAAAAATGTGAACATGACAATTTACAGTTAAAAAAAGGATG
TATAAGTGTGGATGAGTGTAAGGTGCACAAAGAAGGTTATAATGAACTTAACCAATGTTTGACAACTACC
CCAAGAAAAATATGTCAATGTGATAAATATGTGAAAGTCCTTCATCAATTTCCAAATTCAAACGGACAAA
AGAGAGGACATACTGGGAAAAAACCTTTCAAATATATAGAATGTGGCAAAGCTTTTAAGCAGTTCTCAAC
TCTTACTACACATAAGAAAATTCATACTGGAGGGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTT
AACCACTCTTGTAGCCTTACTAGACATAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAAT
GTGGCAAAGCCTTTAAGCACTCCTCCACTCTTACTACACATAAGAGAAATCATACTGGAGAGAAACCCTA
CAAGTGTGATAAATGTGGCAAAGCCTTTATGTCATCCTCAACCCTTAGTAAACATGAGATAATTCATACG
GAAAAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTCAACCGGTCCTCAACCCTTACTACACATA
AGATAATTCATACTGGAGAAAAACCCTACAAATGTGAAGAATGTGACAAAGCCTTTAAGTACTCCTATAC
CCTTACTACACATAAAAGAATTCATACTGAAGACAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTT
AAGTACTCCTCTACCCTTACTACACATAAGAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAAT
GTGGCAAAGCCTTCAAGCGGTCTTCAGACCTTACTACGCATAAGATAATTCATACTGGAGAGAAACCCTA
CAAATGTGAAGAATGTGGCAAAGCTTTTAAGTACTCCTCTAACCTTACTACACATAAGAAAATTCATACT
GGAGAGAGACCCTACAAATGTGAAGAATGTGGCAAAGCCTTCAACCAGTCCTCAATCCTTACTACACATA
GGAGAATTCATACTGGAGAGAAATTCTACAAATGTGAAGAATGTGGCAAAGCTTTTAAGTGCTCCTCTAA
CCTTACTACACATAAGAAAATTCATACTGGAGAGAGACCCTACAAATGTGAAGAATGTGGCAAAGCCTTC
AACCAGTCCTCAATCCTTACTACACATGAGAGAATCATACTGGAGAGAAATTCTACAAATGTGAAGAATG
TGGCAAAGCCTTCAAGCGGTCCTCACACCTTACTACACATAAGATAA

Translation (528 aa):
MGPLQFRDVAIEFSLEEWHCLDTAQRNLYRNVMLENYSNLVFLGITVSKPDLITCLEQGRKPLTMKRNEM
IAKPSVMCSHFAQDLWPEQSMKDSFQKVVLRRYEKCEHDNLQLKKGCISVDECKVHKEGYNELNQCLTTT
PRKICQCDKYVKVLHQFPNSNGQKRGHTGKKPFKYIECGKAFKQFSTLTTHKKIHTGGKPYKCEECGKAF
NHSCSLTRHKKIHTGEKPYKCEECGKAFKHSSTLTTHKRNHTGEKPYKCDKCGKAFMSSSTLSKHEIIHT
EKKPYKCEECGKAFNRSSTLTTHKIIHTGEKPYKCEECDKAFKYSYTLTTHKRIHTEDKPYKCEECGKAF
KYSSTLTTHKRIHTGEKPYKCEECGKAFKRSSDLTTHKIIHTGEKPYKCEECGKAFKYSSNLTTHKKIHT
GERPYKCEECGKAFNQSSILTTHRRIHTGEKFYKCEECGKAFKCSSNLTTHKKIHTGERPYKCEECGKAF
NQSSILTTHERIILERNSTNVKNVAKPSSGPHTLLHIR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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