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Report for CCDS42207.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42207.1 Public Homo sapiens 16 ATP2C2 24 110 108 CCDS HistoryNCBI Gene:9914Re-query CCDS DB by CCDS ID:42207.1Re-query CCDS DB by GeneID:9914See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42207.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262429.9 ENSP00000262429.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262429.9Link to Ensembl Protein Viewer:ENSP00000262429.4Re-query CCDS DB by Nucleotide ID:ENST00000262429Re-query CCDS DB by Protein ID:ENSP00000262429
Original member Current member NCBI NM_014861.4 NP_055676.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014861.4Link to Protein Sequence:NP_055676.3Re-query CCDS DB by Nucleotide ID:NM_014861Re-query CCDS DB by Protein ID:NP_055676Link to BLAST:NP_055676.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055676.3 946 O75185-1 946 100% 0 0

Chromosomal Locations for CCDS 42207.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 84368616 84368714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84398499 84398609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84405128 84405244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84408405 84408494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84410568 84410603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84410704 84410765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84415483 84415591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84422390 84422539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84422629 84422697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84423188 84423263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84425735 84425801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84439166 84439290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84439427 84439524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84440857 84440958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84442510 84442599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84446329 84446430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84448533 84448689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84451921 84452091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84453138 84453235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84453321 84453371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84454818 84454984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84459120 84459188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84459270 84459386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84460654 84460801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84461714 84461812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84461988 84462129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 84463614 84463732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2841 nt):
ATGGTCGAGGGACGCGTCTCCGAGTTCCTGAAGAAACTCGGCTTCTCGGGCGGGGGCCGCCAGTACCAGG
CGCTGGAGAAGGACGAAGAGGAAGCCTTGATTGATGAACAGAGTGAGCTGAAAGCCATCGAGAAAGAGAA
GAAGGTGACAGCCCTGCCCCCCAAGGAAGCGTGCAAATGCCAGAAAGAGGATTTGGCCAGAGCGTTTTGT
GTGGACTTACACACTGGGCTGTCGGAGTTCTCGGTGACGCAGCGCCGGCTGGCCCATGGCTGGAATGAGT
TTGTTGCTGACAACAGCGAACCTGTGTGGAAGAAATACCTGGATCAGTTTAAGAACCCCCTGATCCTGCT
GCTGCTGGGCTCTGCCCTGGTGAGTGTCCTCACCAAGGAGTATGAGGACGCCGTCAGCATCGCCACGGCA
GTGCTTGTCGTGGTCACTGTCGCCTTCATCCAGGAGTACAGGTCGGAGAAATCTCTGGAAGAGCTGACCA
AGCTGGTTCCTCCAGAATGTAACTGCCTAAGAGAAGGAAAACTCCAGCACCTGCTTGCTCGAGAACTGGT
TCCTGGTGATGTCGTATCTCTCTCGATCGGAGACCGGATCCCTGCAGACATCCGACTCACTGAGGTCACG
GACCTCTTGGTGGATGAATCCAGTTTCACCGGGGAAGCCGAGCCATGTAGTAAAACAGACAGCCCCTTGA
CAGGCGGTGGGGACCTCACCACCCTCAGCAACATCGTCTTCATGGGGACCCTGGTGCAGTATGGGAGGGG
CCAGGGGGTCGTGATTGGAACAGGGGAAAGCTCTCAGTTCGGAGAAGTGTTTAAGATGATGCAGGCTGAA
GAGACACCTAAAACTCCTTTGCAGAAAAGCATGGACAGGCTAGGAAAGCAACTGACACTCTTCTCCTTTG
GCATAATCGGTCTCATCATGCTCATTGGCTGGTCGCAAGGGAAACAACTCCTGAGTATGTTCACGATCGG
GGTCAGCCTGGCTGTGGCGGCCATTCCAGAGGGTCTGCCCATCGTCGTCATGGTGACGCTGGTCCTGGGA
GTGCTGCGGATGGCCAAGAAGCGGGTCATCGTGAAGAAGTTACCCATCGTGGAGACTTTAGGTTGCTGCA
GCGTTCTCTGTTCTGACAAGACGGGGACTCTGACTGCCAATGAAATGACAGTGACCCAGCTTGTAACGTC
AGATGGGCTTCGTGCCGAGGTCAGCGGAGTTGGGTATGACGGTCAAGGGACTGTGTGTCTTCTACCATCC
AAGGAAGTCATTAAGGAATTTTCCAATGTCTCAGTGGGAAAGTTAGTGGAGGCGGGCTGTGTTGCCAACA
ATGCGGTCATCAGAAAGAACGCCGTGATGGGGCAGCCCACCGAGGGTGCATTGATGGCCCTGGCGATGAA
GATGGACTTAAGTGATATTAAAAATTCATATATAAGAAAAAAAGAGATTCCATTCAGTTCAGAGCAGAAG
TGGATGGCGGTGAAATGCAGTCTGAAGACTGAGGATCAGGAAGACATTTACTTCATGAAAGGGGCCTTGG
AAGAGGTGATCCGCTACTGCACCATGTACAACAACGGGGGCATCCCCCTGCCGCTGACGCCCCAGCAGAG
GTCATTCTGCCTGCAGGAAGAGAAGAGGATGGGGTCGCTCGGTTTGCGGGTGCTGGCCCTGGCTTCTGGG
CCCGAGCTGGGGCGGCTGACGTTTCTCGGTCTTGTGGGCATCATTGACCCCCCGAGAGTTGGCGTGAAGG
AAGCAGTCCAGGTTCTCTCCGAGTCTGGTGTGTCTGTGAAGATGATAACGGGGGATGCCCTGGAGACGGC
CTTGGCCATAGGAAGAAACATCGGCCTGTGCAACGGGAAGCTGCAAGCCATGTCCGGGGAGGAGGTGGAC
AGCGTGGAGAAGGGCGAGCTGGCCGACCGCGTGGGGAAGGTGTCCGTGTTCTTCAGGACCAGCCCAAAGC
ACAAGCTCAAAATCATCAAGGCTCTGCAGGAGTCAGGGGCGATCGTGGCCATGACTGGGGATGGGGTGAA
CGACGCAGTGGCCCTGAAGTCTGCAGACATTGGGATCGCCATGGGGCAGACAGGGACGGACGTCAGCAAA
GAGGCCGCCAACATGATCCTGGTGGATGATGACTTCTCAGCCATCATGAATGCAGTGGAGGAAGGCAAGG
GTATTTTTTACAACATCAAAAACTTTGTCCGATTCCAGCTGAGCACGAGCATCTCCGCCCTGAGTCTCAT
CACTCTGTCCACCGTGTTCAACCTGCCCAGCCCCCTCAACGCCATGCAGATCCTATGGATCAACATCATC
ATGGATGGGCCACCGGCGCAGAGCTTGGGGGTAGAGCCCGTTGACAAAGACGCCTTCAGGCAGCCACCAC
GGAGTGTGCGGGACACCATCCTCAGCAGAGCCCTCATCCTGAAGATCCTCATGTCCGCGGCCATCATCAT
CAGCGGGACCCTCTTTATCTTCTGGAAGGAGATGCCTGAAGACAGAGCAAGCACTCCCCGCACCACGACG
ATGACGTTCACTTGTTTTGTGTTTTTCGATCTCTTCAACGCCTTGACCTGCCGCTCTCAGACCAAGCTGA
TATTTGAGATCGGCTTTCTCAGGAACCACATGTTCCTCTACTCCGTCCTGGGGTCCATCCTGGGGCAGCT
GGCGGTCATTTACATCCCCCCGCTGCAGAGGGTCTTCCAGACGGAGAACCTGGGAGCGCTTGATTTGCTG
TTTTTAACTGGATTGGCCTCATCCGTCTTCATTTTGTCAGAGCTCCTCAAACTATGTGAAAAATACTGTT
GCAGCCCCAAGAGAGTCCAGATGCACCCTGAAGATGTGTAG

Translation (946 aa):
MVEGRVSEFLKKLGFSGGGRQYQALEKDEEEALIDEQSELKAIEKEKKVTALPPKEACKCQKEDLARAFC
VDLHTGLSEFSVTQRRLAHGWNEFVADNSEPVWKKYLDQFKNPLILLLLGSALVSVLTKEYEDAVSIATA
VLVVVTVAFIQEYRSEKSLEELTKLVPPECNCLREGKLQHLLARELVPGDVVSLSIGDRIPADIRLTEVT
DLLVDESSFTGEAEPCSKTDSPLTGGGDLTTLSNIVFMGTLVQYGRGQGVVIGTGESSQFGEVFKMMQAE
ETPKTPLQKSMDRLGKQLTLFSFGIIGLIMLIGWSQGKQLLSMFTIGVSLAVAAIPEGLPIVVMVTLVLG
VLRMAKKRVIVKKLPIVETLGCCSVLCSDKTGTLTANEMTVTQLVTSDGLRAEVSGVGYDGQGTVCLLPS
KEVIKEFSNVSVGKLVEAGCVANNAVIRKNAVMGQPTEGALMALAMKMDLSDIKNSYIRKKEIPFSSEQK
WMAVKCSLKTEDQEDIYFMKGALEEVIRYCTMYNNGGIPLPLTPQQRSFCLQEEKRMGSLGLRVLALASG
PELGRLTFLGLVGIIDPPRVGVKEAVQVLSESGVSVKMITGDALETALAIGRNIGLCNGKLQAMSGEEVD
SVEKGELADRVGKVSVFFRTSPKHKLKIIKALQESGAIVAMTGDGVNDAVALKSADIGIAMGQTGTDVSK
EAANMILVDDDFSAIMNAVEEGKGIFYNIKNFVRFQLSTSISALSLITLSTVFNLPSPLNAMQILWINII
MDGPPAQSLGVEPVDKDAFRQPPRSVRDTILSRALILKILMSAAIIISGTLFIFWKEMPEDRASTPRTTT
MTFTCFVFFDLFNALTCRSQTKLIFEIGFLRNHMFLYSVLGSILGQLAVIYIPPLQRVFQTENLGALDLL
FLTGLASSVFILSELLKLCEKYCCSPKRVQMHPEDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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