NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42178.1 Public Homo sapiens 16 SLC9A5 24 110 108 CCDS HistoryNCBI Gene:6553Re-query CCDS DB by CCDS ID:42178.1Re-query CCDS DB by GeneID:6553See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42178.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299798.16 ENSP00000299798.11 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299798.16Link to Ensembl Protein Viewer:ENSP00000299798.11Re-query CCDS DB by Nucleotide ID:ENST00000299798Re-query CCDS DB by Protein ID:ENSP00000299798
Original member Current member NCBI NM_004594.3 NP_004585.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004594.3Link to Protein Sequence:NP_004585.1Re-query CCDS DB by Nucleotide ID:NM_004594Re-query CCDS DB by Protein ID:NP_004585Link to BLAST:NP_004585.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004585.1 896 Q14940 896 100% 0 0

Chromosomal Locations for CCDS 42178.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 67249015 67249201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67252542 67252844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67255021 67255184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67255393 67255471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67255753 67255930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67256469 67256689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67256911 67257113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67257345 67257434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67257531 67257601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67258318 67258447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67259573 67259661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67259820 67259946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67264352 67264522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67265040 67265106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67266088 67266225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67270738 67271210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2691 nt):
ATGCTGCGCGCCGCCCTGTCCCTGCTCGCGCTGCCCCTGGCGGGGGCGGCCGAAGAGCCCACCCAGAAGC
CAGAGTCCCCGGGCGAGCCTCCCCCAGGCTTAGAGCTCTTCCGCTGGCAGTGGCACGAGGTGGAGGCGCC
CTACCTGGTGGCCCTGTGGATCCTGGTGGCCAGTCTGGCCAAAATCGTGTTTCACCTGTCTCGGAAAGTA
ACATCTCTGGTCCCTGAGAGCTGCCTGCTGATTTTGCTGGGCCTGGTGCTAGGGGGAATTGTTTTGGCTG
TGGCCAAGAAAGCTGAGTACCAGCTGGAGCCAGGCACCTTCTTCCTCTTCCTGCTGCCTCCTATTGTGTT
GGACTCAGGCTATTTCATGCCTAGCAGGCTGTTCTTTGACAACTTGGGTGCCATCCTCACCTATGCCGTG
GTAGGCACACTCTGGAATGCCTTCACAACAGGCGCTGCCCTCTGGGGCTTGCAGCAGGCTGGACTTGTAG
CCCCTAGGGTGCAGGCTGGCTTACTGGACTTCCTGCTGTTTGGGAGCCTCATCTCGGCGGTGGACCCCGT
GGCCGTGCTAGCTGTCTTTGAGGAGGTGCACGTCAATGAGACTCTCTTTATCATCGTCTTTGGCGAGTCC
CTGCTCAACGATGCTGTCACCGTGGTGCTGTACAAGGTCTGCAACTCCTTTGTGGAGATGGGCTCTGCCA
ATGTGCAGGCCACTGACTACCTGAAGGGAGTCGCCTCCCTGTTTGTGGTCAGTCTGGGCGGGGCAGCCGT
GGGCTTAGTCTTTGCCTTCCTCCTGGCCCTGACCACACGCTTCACCAAGCGGGTCCGCATCATCGAGCCG
CTGCTGGTCTTCCTCCTCGCCTACGCAGCCTACCTCACTGCTGAAATGGCCTCGCTCTCCGCCATTCTTG
CGGTGACCATGTGTGGCCTGGGCTGTAAGAAGTACGTGGAGGCCAACATCTCCCATAAGTCACGCACAAC
TGTCAAATATACAATGAAGACTCTAGCCAGCTGTGCTGAGACCGTGATCTTCATGCTGCTTGGCATCTCA
GCCGTGGACTCTTCTAAGTGGGCCTGGGATTCTGGGCTGGTGCTGGGCACCCTCATCTTCATCCTGTTCT
TCCGAGCCCTCGGCGTAGTCCTGCAGACCTGGGTGCTGAATCAGTTCCGGCTAGTCCCTCTGGACAAGAT
TGACCAAGTGGTGATGTCCTATGGGGGCCTGCGGGGGGCTGTGGCCTTTGCTCTCGTCATCCTACTGGAT
AGGACCAAGGTCCCTGCCAAGGACTACTTTGTAGCCACCACTATTGTAGTGGTCTTCTTCACAGTCATCG
TGCAGGGCTTGACCATCAAGCCACTGGTCAAATGGCTGAAGGTGAAGAGGAGTGAGCATCACAAACCCAC
CCTGAACCAGGAGCTGCATGAACACACTTTTGACCACATTCTGGCTGCAGTGGAGGACGTTGTGGGGCAC
CATGGCTACCACTACTGGAGGGACAGGTGGGAGCAGTTTGACAAGAAATACCTGAGTCAGCTGCTGATGC
GACGATCAGCCTACCGCATCCGGGACCAGATCTGGGATGTGTACTACAGGCTTAACATCCGGGATGCCAT
CAGCTTTGTGGACCAGGGAGGCCACGTCTTGTCTTCCACAGGTCTCACTCTGCCTTCTATGCCCAGCCGC
AATTCTGTGGCAGAAACTTCTGTCACCAACCTGCTGAGGGAGAGTGGCAGTGGAGCGTGTCTGGATCTGC
AGGTGATTGACACAGTACGCAGCGGCCGGGATCGTGAGGATGCTGTGATGCATCATCTGCTCTGCGGAGG
CCTCTACAAGCCGCGCCGTAGGTACAAAGCCAGCTGCAGTCGCCACTTCATCTCAGAGGATGCGCAGGAG
CGGCAGGACAAGGAGGTCTTCCAGCAGAACATGAAGCGGCGGCTGGAGTCCTTTAAGTCCACCAAGCACA
ACATCTGCTTCACCAAGAGCAAGCCACGACCCCGCAAGACTGGCCGCAGGAAGAAGGATGGTGTGGCGAA
TGCTGAGGCTACAAATGGGAAACATCGAGGCCTGGGCTTTCAGGACACAGCTGCTGTGATATTAACCGTG
GAGTCTGAGGAGGAGGAGGAGGAGAGCGACAGTTCAGAGACAGAGAAGGAGGACGATGAGGGGATCATCT
TTGTGGCTCGTGCCACCAGTGAGGTTCTCCAAGAGGGCAAGGTCTCAGGAAGCCTTGAGGTGTGCCCAAG
CCCACGAATCATTCCCCCCTCCCCAACCTGTGCAGAAAAGGAGCTCCCCTGGAAGAGTGGGCAGGGGGAC
CTGGCAGTGTACGTGTCCTCGGAAACCACCAAGATTGTGCCTGTGGACATGCAGACGGGTTGGAACCAGA
GCATCTCATCCCTGGAGAGCCTAGCGTCCCCTCCCTGTAACCAGGCCCCAATTCTGACCTGCCTGCCTCC
CCATCCACGGGGCACTGAAGAGCCCCAGGTCCCTCTCCACCTACCTTCTGATCCACGCTCTAGCTTCGCC
TTCCCACCGAGCCTGGCCAAGGCTGGCCGCTCTCGCAGTGAGAGCAGCGCTGACCTCCCCCAGCAGCAGG
AGCTGCAGCCCCTCATGGGCCACAAGGACCACACCCATCTCAGCCCAGGCACCGCTACCTCCCACTGGTG
CATCCAGTTCAACAGAGGCAGCCGGCTGTAG

Translation (896 aa):
MLRAALSLLALPLAGAAEEPTQKPESPGEPPPGLELFRWQWHEVEAPYLVALWILVASLAKIVFHLSRKV
TSLVPESCLLILLGLVLGGIVLAVAKKAEYQLEPGTFFLFLLPPIVLDSGYFMPSRLFFDNLGAILTYAV
VGTLWNAFTTGAALWGLQQAGLVAPRVQAGLLDFLLFGSLISAVDPVAVLAVFEEVHVNETLFIIVFGES
LLNDAVTVVLYKVCNSFVEMGSANVQATDYLKGVASLFVVSLGGAAVGLVFAFLLALTTRFTKRVRIIEP
LLVFLLAYAAYLTAEMASLSAILAVTMCGLGCKKYVEANISHKSRTTVKYTMKTLASCAETVIFMLLGIS
AVDSSKWAWDSGLVLGTLIFILFFRALGVVLQTWVLNQFRLVPLDKIDQVVMSYGGLRGAVAFALVILLD
RTKVPAKDYFVATTIVVVFFTVIVQGLTIKPLVKWLKVKRSEHHKPTLNQELHEHTFDHILAAVEDVVGH
HGYHYWRDRWEQFDKKYLSQLLMRRSAYRIRDQIWDVYYRLNIRDAISFVDQGGHVLSSTGLTLPSMPSR
NSVAETSVTNLLRESGSGACLDLQVIDTVRSGRDREDAVMHHLLCGGLYKPRRRYKASCSRHFISEDAQE
RQDKEVFQQNMKRRLESFKSTKHNICFTKSKPRPRKTGRRKKDGVANAEATNGKHRGLGFQDTAAVILTV
ESEEEEEESDSSETEKEDDEGIIFVARATSEVLQEGKVSGSLEVCPSPRIIPPSPTCAEKELPWKSGQGD
LAVYVSSETTKIVPVDMQTGWNQSISSLESLASPPCNQAPILTCLPPHPRGTEEPQVPLHLPSDPRSSFA
FPPSLAKAGRSRSESSADLPQQQELQPLMGHKDHTHLSPGTATSHWCIQFNRGSRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH