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Report for CCDS42072.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42072.2 Public Homo sapiens 15 CPEB1 24 110 108 CCDS HistoryNCBI Gene:64506Re-query CCDS DB by CCDS ID:42072.2Re-query CCDS DB by GeneID:64506See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 42072.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000618449.4 ENSP00000483590.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618449.4Link to Ensembl Protein Viewer:ENSP00000483590.1Re-query CCDS DB by Nucleotide ID:ENST00000618449Re-query CCDS DB by Protein ID:ENSP00000483590
Original member Current member NCBI NM_001079533.2 NP_001073001.1 Accepted alive Link to Nucleotide Sequence:NM_001079533.2Link to Protein Sequence:NP_001073001.1Re-query CCDS DB by Nucleotide ID:NM_001079533Re-query CCDS DB by Protein ID:NP_001073001Link to BLAST:NP_001073001.1
Original member Current member NCBI NM_001365250.1 NP_001352179.1 Accepted alive Link to Nucleotide Sequence:NM_001365250.1Link to Protein Sequence:NP_001352179.1Re-query CCDS DB by Nucleotide ID:NM_001365250Re-query CCDS DB by Protein ID:NP_001352179Link to BLAST:NP_001352179.1
Original member Current member NCBI NM_001387068.1 NP_001373997.1 Accepted alive Link to Nucleotide Sequence:NM_001387068.1Link to Protein Sequence:NP_001373997.1Re-query CCDS DB by Nucleotide ID:NM_001387068Re-query CCDS DB by Protein ID:NP_001373997Link to BLAST:NP_001373997.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073001.1 491 Q9BZB8-2 491 100% 0 0
NP_001352179.1 491 Q9BZB8-2 491 100% 0 0
NP_001373997.1 491 Q9BZB8-2 491 100% 0 0

Chromosomal Locations for CCDS 42072.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 82544592 82544702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82546441 82546521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82547143 82547237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82549460 82549658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82552480 82552616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82553452 82553556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82553878 82553991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82555870 82556122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82557760 82557986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82571344 82571497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGCTTTTCCCAACCTCTGCGCAAGAATCTTCCCGTGGCCTCCCAGATGCAAATGACTTGTGCCTTGGCC
TGCAGTCCCTCAGTCTGACAGGCTGGGACCGACCCTGGAGCACCCAGGACTCAGATTCCTCAGCCCAGAG
CAGCACACACTCGGTACTGAGCATGCTCCATAACCCACTGGGAAATGTCCTAGGAAAACCCCCCTTGAGC
TTCCTGCCTCTGGATCCCCTTGGGTCTGACTTGGTGGACAAGTTTCCAGCACCCTCAGTTAGAGGATCAC
GCCTGGACACCCGGCCCATCCTGGACTCTCGATCTAGCAGCCCCTCTGACTCAGACACCAGTGGCTTCAG
CTCTGGATCAGATCATCTCTCAGATTTGATTTCAAGCCTTCGCATTTCTCCACCTCTGCCCTTCCTGTCT
CTGTCAGGGGGTGGTCCCAGAGACCCTTTAAAGATGGGGGTAGGGTCTCGGATGGACCAAGAGCAAGCTG
CTCTTGCTGCAGTCACTCCCTCCCCAACCAGTGCTTCAAAGAGATGGCCAGGAGCTTCTGTGTGGCCATC
CTGGGACCTCCTCGAAGCTCCCAAAGACCCCTTCAGCATAGAGAGAGAGGCCAGGCTGCACCGACAAGCT
GCAGCTGTGAATGAAGCCACCTGTACCTGGAGTGGCCAGCTTCCTCCCCGGAACTATAAGAACCCCATCT
ACTCTTGCAAGGTGTTTCTAGGAGGTGTTCCTTGGGATATTACAGAAGCTGGATTAGTTAACACCTTCCG
TGTTTTTGGCTCTTTGAGTGTGGAGTGGCCTGGTAAGGATGGCAAGCATCCCCGGTGTCCTCCCAAAGGT
AATATGCCTAAAGGGTATGTGTATCTGGTCTTCGAACTAGAGAAGTCTGTCCGATCCTTGCTTCAGGCTT
GCTCTCATGACCCGCTGAGCCCAGATGGCCTGAGTGAATATTATTTCAAGATGTCCAGCCGAAGGATGCG
CTGCAAGGAGGTGCAGGTGATCCCCTGGGTATTAGCCGACAGTAACTTTGTCCGGAGCCCATCTCAGAGG
CTTGACCCCAGCAGGACGGTGTTTGTCGGTGCTCTGCATGGAATGCTAAATGCTGAGGCCCTGGCAGCCA
TCTTGAACGACCTATTTGGTGGAGTGGTGTATGCCGGGATTGACACAGATAAGCACAAGTATCCCATTGG
TTCTGGTCGTGTGACTTTCAATAACCAACGGAGTTACCTGAAAGCAGTCAGCGCTGCTTTTGTGGAGATC
AAAACCACCAAGTTCACAAAGAAGGTTCAGATTGACCCCTACCTAGAAGATTCTCTGTGTCATATCTGCA
GTTCTCAGCCTGGTCCTTTCTTCTGTCGAGATCAGGTCTGCTTCAAATACTTCTGCCGGAGCTGCTGGCA
CTGGCGGCACAGCATGGAGGGCCTGCGCCACCACAGCCCCCTGATGCGGAACCAGAAGAACCGAGATTCC
AGCTAG

Translation (491 aa):
MLFPTSAQESSRGLPDANDLCLGLQSLSLTGWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLS
FLPLDPLGSDLVDKFPAPSVRGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLS
LSGGGPRDPLKMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA
AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKG
NMPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQR
LDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEI
KTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDS
S


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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