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Report for CCDS42071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42071.1 Public Homo sapiens 15 EFL1 24 110 108 CCDS HistoryNCBI Gene:79631Re-query CCDS DB by CCDS ID:42071.1Re-query CCDS DB by GeneID:79631See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42071.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268206.12 ENSP00000268206.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000268206.12Link to Ensembl Protein Viewer:ENSP00000268206.7Re-query CCDS DB by Nucleotide ID:ENST00000268206Re-query CCDS DB by Protein ID:ENSP00000268206
Original member Current member EBI ENST00000696330.1 ENSP00000512564.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696330.1Link to Ensembl Protein Viewer:ENSP00000512564.1Re-query CCDS DB by Nucleotide ID:ENST00000696330Re-query CCDS DB by Protein ID:ENSP00000512564
Original member Current member NCBI NM_001322845.2 NP_001309774.1 Accepted alive Link to Nucleotide Sequence:NM_001322845.2Link to Protein Sequence:NP_001309774.1Re-query CCDS DB by Nucleotide ID:NM_001322845Re-query CCDS DB by Protein ID:NP_001309774Link to BLAST:NP_001309774.1
Original member Current member NCBI NM_024580.6 NP_078856.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024580.6Link to Protein Sequence:NP_078856.4Re-query CCDS DB by Nucleotide ID:NM_024580Re-query CCDS DB by Protein ID:NP_078856Link to BLAST:NP_078856.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309774.1 1120 Q7Z2Z2-1 1120 100% 0 0
NP_078856.4 1120 Q7Z2Z2-1 1120 100% 0 0

Chromosomal Locations for CCDS 42071.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 82130373 82130561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82138658 82138842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82151465 82152423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82157713 82157860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82163853 82163984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82214717 82214855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82219652 82219818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82220078 82220229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82225165 82225264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82227450 82227572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82228191 82228327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82229034 82229110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82230848 82230971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82238307 82238521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82240418 82240555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82241270 82241403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82252691 82252775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82259088 82259155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82261688 82261778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3363 nt):
ATGGTGCTCAACAGTTTGGATAAGATGATTCAACTCCAGAAAAACACTGCCAACATCAGGAATATTTGTG
TTTTGGCTCATGTTGACCATGGAAAAACTACTCTGGCTGACTGTCTTATATCTAGCAATGGAATCATCTC
CAGCCGCCTAGCAGGCAAGTTAAGGTACATGGACAGCAGAGAAGATGAACAGATCCGAGGGATCACTATG
AAATCCAGTGCCATTTCCCTACATTATGCAACAGGTAATGAGGAGTACCTGATCAATCTGATAGACTCTC
CAGGACACGTGGACTTTTCCTCAGAAGTATCAACCGCTGTTCGCATTTGTGATGGATGCATCATTGTGGT
AGATGCTGTGGAAGGAGTCTGTCCACAGACACAGGCAGTTCTGCGACAAGCTTGGCTTGAAAACATCCGT
CCGGTTTTAGTGATTAATAAGATTGATCGCTTGATAGTGGAACTGAAATTCACCCCACAAGAGGCCTATT
CTCACCTCAAGAATATTTTAGAACAGATTAATGCGCTCACAGGGACTCTTTTTACTTCTAAAGTCCTAGA
AGAAAGAGCAGAGAGGGAGACTGAATCCCAAGTGAATCCAAATTCTGAACAAGGAGAGCAAGTATATGAC
TGGAGCACTGGCTTGGAGGACACAGATGATTCTCACCTTTACTTCTCTCCAGAACAGGGAAATGTGGTGT
TTACCAGTGCAATAGATGGGTGGGGCTTTGGAATTGAGCACTTCGCCAGAATCTACAGTCAAAAAATTGG
CATCAAAAAGGAAGTTCTTATGAAAACCTTGTGGGGAGATTACTATATAAATATGAAGGCTAAAAAGATC
ATGAAGGGTGATCAGGCCAAAGGAAAGAAACCTTTATTTGTACAGTTGATCCTGGAAAATATATGGAGTT
TGTATGATGCTGTTTTGAAAAAGGACAAAGACAAAATTGATAAAATAGTGACTTCTTTAGGATTAAAAAT
TGGAGCCCGGGAGGCACGACATTCAGACCCTAAAGTTCAGATCAACGCCATTTGCAGTCAGTGGCTACCC
ATATCCCATGCTGTTCTTGCTATGGTGTGTCAGAAACTTCCTAGTCCCCTTGATATTACAGCTGAGAGAG
TGGAGAGACTGATGTGCACAGGATCACAAACTTTTGACTCTTTTCCACCAGAAACTCAAGCACTGAAAGC
AGCTTTTATGAAATGTGGAAGTGAGGACACTGCTCCAGTTATTATATTTGTTTCCAAAATGTTTGCAGTT
GATGCTAAGGCCTTGCCTCAGAATAAGCCAAGGCCTCTCACTCAAGAAGAAATTGCTCAGAGACGTGAGC
GTGCAAGACAAAGGCATGCAGAGAAGCTTGCAGCAGCACAGGGACAGGCACCCTTGGAGCCCACCCAAGA
TGGGAGTGCCATTGAAACATGTCCAAAAGGAGAGGAGCCAAGAGGTGACGAGCAACAGGTGGAAAGTATG
ACCCCTAAACCTGTGCTCCAGGAAGAAAACAACCAAGAGTCTTTTATTGCATTTGCTCGGGTGTTCAGTG
GTGTGGCTCGAAGAGGAAAGAAAATTTTTGTCTTGGGGCCCAAATACAGTCCTCTTGAGTTTTTACGAAG
GGTACCATTAGGCTTCTCAGCTCCACCAGATGGCCTCCCCCAAGTCCCCCACATGGCATACTGTGCTCTG
GAAAACCTGTATCTTCTGATGGGAAGGGAACTGGAATATCTAGAGGAGGTACCTCCAGGAAATGTGCTAG
GAATAGGAGGCCTTCAAGATTTTGTGCTGAAATCTGCAACACTGTGTAGCCTGCCATCCTGCCCACCATT
TATACCACTCAACTTCGAAGCCACTCCTATTGTGAGAGTTGCTGTTGAACCAAAACATCCAAGTGAAATG
CCTCAGCTCGTAAAAGGAATGAAACTGTTAAACCAGGCTGATCCCTGTGTCCAGATTTTAATTCAGGAAA
CGGGAGAGCACGTTTTAGTCACAGCAGGAGAAGTCCACCTTCAGCGATGCCTGGATGACTTAAAAGAAAG
GTTTGCAAAGATTCATATCAGTGTATCTGAACCTATTATTCCATTCAGAGAAACAATCACAAAACCCCCA
AAAGTTGACATGGTCAATGAAGAAATAGGCAAACAGCAAAAAGTTGCAGTCATACACCAAATGAAAGAAG
ATCAAAGCAAAATCCCTGAAGGAATCCAAGTTGACTCTGACGGGCTAATCACCATAACAACTCCCAATAA
ACTTGCCACGCTCAGTGTTCGAGCCATGCCCCTTCCAGAAGAAGTCACCCAGATTCTGGAAGAAAATAGT
GATTTGATTCGTTCTATGGAGCAGTTGACATCCTCTTTGAATGAGGGTGAAAATACTCACATGATTCATC
AGAAGACCCAAGAGAAAATTTGGGAATTCAAAGGAAAACTGGAGCAACACCTAACAGGGAGAAGATGGAG
GAACATTGTTGACCAAATCTGGTCATTTGGCCCAAGAAAATGTGGGCCCAACATACTAGTCAATAAAAGT
GAAGATTTTCAGAACTCAGTATGGACAGGTCCAGCTGACAAAGCTTCAAAAGAAGCCAGTAGATACCGAG
ATTTGGGCAATAGCATTGTGAGTGGCTTCCAACTAGCAACCCTCTCTGGCCCCATGTGTGAGGAGCCTCT
CATGGGTGTCTGTTTTGTTCTGGAAAAATGGGACCTAAGTAAATTTGAGGAACAAGGAGCAAGTGATCTG
GCAAAAGAGGGACAGGAGGAAAATGAAACCTGTTCTGGTGGAAATGAAAACCAAGAGCTACAAGATGGCT
GCTCTGAGGCCTTTGAGAAGAGGACATCACAGAAAGGAGAATCTCCACTCACTGACTGCTATGGACCTTT
CTCAGGACAGCTAATTGCCACCATGAAAGAAGCATGTCGCTATGCACTGCAAGTGAAACCTCAGCGCCTG
ATGGCAGCTATGTACACATGTGACATCATGGCCACTGGTGATGTTCTCGGTCGAGTCTATGCTGTCTTGT
CAAAGAGAGAAGGTCGGGTACTTCAAGAAGAAATGAAAGAAGGGACAGACATGTTCATCATCAAGGCTGT
GCTGCCTGTTGCTGAAAGCTTTGGTTTTGCTGATGAAATCAGGAAGAGGACAAGTGGCCTGGCCAGCCCA
CAACTAGTATTCAGCCATTGGGAGATCATTCCCAGTGACCCCTTCTGGGTGCCAACTACTGAGGAGGAAT
ACTTGCACTTTGGGGAGAAGGCTGACTCTGAGAACCAAGCCCGGAAGTACATGAACGCAGTACGAAAGCG
GAAGGGGCTTTATGTGGAAGAAAAGATTGTGGAGCATGCAGAAAAGCAGAGGACACTCAGCAAAAATAAG
TAG

Translation (1120 aa):
MVLNSLDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQIRGITM
KSSAISLHYATGNEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIR
PVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERETESQVNPNSEQGEQVYD
WSTGLEDTDDSHLYFSPEQGNVVFTSAIDGWGFGIEHFARIYSQKIGIKKEVLMKTLWGDYYINMKAKKI
MKGDQAKGKKPLFVQLILENIWSLYDAVLKKDKDKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLP
ISHAVLAMVCQKLPSPLDITAERVERLMCTGSQTFDSFPPETQALKAAFMKCGSEDTAPVIIFVSKMFAV
DAKALPQNKPRPLTQEEIAQRRERARQRHAEKLAAAQGQAPLEPTQDGSAIETCPKGEEPRGDEQQVESM
TPKPVLQEENNQESFIAFARVFSGVARRGKKIFVLGPKYSPLEFLRRVPLGFSAPPDGLPQVPHMAYCAL
ENLYLLMGRELEYLEEVPPGNVLGIGGLQDFVLKSATLCSLPSCPPFIPLNFEATPIVRVAVEPKHPSEM
PQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIHISVSEPIIPFRETITKPP
KVDMVNEEIGKQQKVAVIHQMKEDQSKIPEGIQVDSDGLITITTPNKLATLSVRAMPLPEEVTQILEENS
DLIRSMEQLTSSLNEGENTHMIHQKTQEKIWEFKGKLEQHLTGRRWRNIVDQIWSFGPRKCGPNILVNKS
EDFQNSVWTGPADKASKEASRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQGASDL
AKEGQEENETCSGGNENQELQDGCSEAFEKRTSQKGESPLTDCYGPFSGQLIATMKEACRYALQVKPQRL
MAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASP
QLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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