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Report for CCDS4204.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4204.1 Public Homo sapiens 5 FAM53C 24 110 108 CCDS HistoryNCBI Gene:51307Re-query CCDS DB by CCDS ID:4204.1Re-query CCDS DB by GeneID:51307See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4204.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000239906.10 ENSP00000239906.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000239906.10Link to Ensembl Protein Viewer:ENSP00000239906.5Re-query CCDS DB by Nucleotide ID:ENST00000239906Re-query CCDS DB by Protein ID:ENSP00000239906
Original member Current member EBI ENST00000434981.6 ENSP00000403705.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000434981.6Link to Ensembl Protein Viewer:ENSP00000403705.2Re-query CCDS DB by Nucleotide ID:ENST00000434981Re-query CCDS DB by Protein ID:ENSP00000403705
Original member Current member NCBI NM_001135647.2 NP_001129119.1 Accepted alive Link to Nucleotide Sequence:NM_001135647.2Link to Protein Sequence:NP_001129119.1Re-query CCDS DB by Nucleotide ID:NM_001135647Re-query CCDS DB by Protein ID:NP_001129119Link to BLAST:NP_001129119.1
Original member Current member NCBI NM_016605.3 NP_057689.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016605.3Link to Protein Sequence:NP_057689.1Re-query CCDS DB by Nucleotide ID:NM_016605Re-query CCDS DB by Protein ID:NP_057689Link to BLAST:NP_057689.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129119.1 392 Q9NYF3 392 100% 0 0
NP_057689.1 392 Q9NYF3 392 100% 0 0

Chromosomal Locations for CCDS 4204.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138341336 138341413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138341809 138341866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138344825 138345609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138346702 138346959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGATAACCCTGATCACTGAGCAGCTACAGAAGCAGACTCTGGATGAGCTGAAATGCACACGCTTCAGCA
TCAGTCTGCCTTTGCCTGATCATGCAGACATCTCCAACTGTGGGAACTCTTTCCAGCTTGTGTCTGAAGG
TGCTTCCTGGAGGGGCCTGCCCCACTGTTCCTGTGCTGAGTTCCAGGACAGCCTCAACTTCAGCTACCAT
CCCTCAGGCCTGAGCCTGCACCTCAGACCACCCAGTCGGGGAAACTCCCCCAAGGAGCAGCCCTTCTCCC
AAGTCCTAAGACCTGAGCCCCCAGATCCAGAGAAGCTTCCTGTGCCCCCTGCCCCTCCATCCAAGAGGCA
CTGCCGCTCACTCTCAGTGCCCGTGGACCTGTCTCGCTGGCAGCCGGTGTGGCGGCCCGCCCCCTCCAAG
CTGTGGACTCCCATAAAGCACCGGGGCAGTGGTGGAGGGGGTGGGCCGCAGGTGCCTCACCAGAGCCCCC
CAAAGCGGGTCTCCAGCCTCAGGTTCCTCCAAGCTCCCAGTGCCTCTTCTCAATGTGCCCCAGCTCACAG
ACCCTACAGCCCTCCTTTCTTCAGCCTGGCCCTGGCCCAAGATTCCTCTCGACCCTGCGCCGCCTCCCCT
CAAAGTGGCTCCTGGGAGAGTGATGCTGAGTCCTTGTCACCTTGCCCACCTCAGCGCCGCTTCTCCCTGT
CACCCAGTCTGGGCCCGCAGGCAAGCCGCTTCTTGCCCTCTGCCCGGAGCTCTCCCGCATCCTCCCCAGA
GCTGCCCTGGCGACCTCGAGGTCTCCGCAACCTTCCCCGAAGCCGCTCACAGCCTTGTGATCTGGATGCC
CGCAAAACTGGGGTCAAGCGGCGCCACGAGGAAGACCCCCGGCGTCTGCGGCCTTCGTTGGACTTTGACA
AGATGAATCAGAAACCATACTCAGGAGGTCTTTGTCTCCAAGAAACAGCCCGGGAAGGCAGCAGCATCTC
TCCACCATGGTTCATGGCCTGTAGCCCCCCACCCCTCTCTGCTTCCTGCAGCCCCACTGGGGGTTCCTCC
CAGGTGCTGAGTGAAAGCGAAGAGGAGGAGGAGGGGGCTGTGCGGTGGGGTCGGCAGGCGCTGAGCAAGC
GGACACTGTGCCAGCGGGACTTTGGGGACCTGGACTTGAATTTGATTGAGGAAAACTAA

Translation (392 aa):
MITLITEQLQKQTLDELKCTRFSISLPLPDHADISNCGNSFQLVSEGASWRGLPHCSCAEFQDSLNFSYH
PSGLSLHLRPPSRGNSPKEQPFSQVLRPEPPDPEKLPVPPAPPSKRHCRSLSVPVDLSRWQPVWRPAPSK
LWTPIKHRGSGGGGGPQVPHQSPPKRVSSLRFLQAPSASSQCAPAHRPYSPPFFSLALAQDSSRPCAASP
QSGSWESDAESLSPCPPQRRFSLSPSLGPQASRFLPSARSSPASSPELPWRPRGLRNLPRSRSQPCDLDA
RKTGVKRRHEEDPRRLRPSLDFDKMNQKPYSGGLCLQETAREGSSISPPWFMACSPPPLSASCSPTGGSS
QVLSESEEEEEGAVRWGRQALSKRTLCQRDFGDLDLNLIEEN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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