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Report for CCDS41971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41971.1 Public Homo sapiens 14 AREL1 24 110 108 CCDS HistoryNCBI Gene:9870Re-query CCDS DB by CCDS ID:41971.1Re-query CCDS DB by GeneID:9870See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41971.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356357.9 ENSP00000348714.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356357.9Link to Ensembl Protein Viewer:ENSP00000348714.4Re-query CCDS DB by Nucleotide ID:ENST00000356357Re-query CCDS DB by Protein ID:ENSP00000348714
Original member Current member EBI ENST00000681599.1 ENSP00000505623.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681599.1Link to Ensembl Protein Viewer:ENSP00000505623.1Re-query CCDS DB by Nucleotide ID:ENST00000681599Re-query CCDS DB by Protein ID:ENSP00000505623
Original member Current member NCBI NM_001039479.2 NP_001034568.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039479.2Link to Protein Sequence:NP_001034568.1Re-query CCDS DB by Nucleotide ID:NM_001039479Re-query CCDS DB by Protein ID:NP_001034568Link to BLAST:NP_001034568.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034568.1 823 O15033-1 823 100% 0 0

Chromosomal Locations for CCDS 41971.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 74663720 74663822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74663899 74664074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74664836 74664925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74667319 74667377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74667465 74667594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74669649 74669774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74669947 74670126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74670762 74670871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74671408 74671483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74672831 74672952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74673077 74673218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74674034 74674111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74675699 74675946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74676141 74676321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74676583 74676752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74683296 74683533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74684454 74684680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74685600 74685615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2472 nt):
ATGTTTTACGTTATTGGTGGAATCACAGTGTCTGTGGTTGCATTCTTCTTCACAATTAAGTTCCTCTTTG
AGCTTGCCGCACGTGTAGTCAGCTTCCTCCAGAATGAGGACCGCGAGCGCCGAGGGGACCGGACTATTTA
TGACTACGTGCGGGGAAATTACCTGGATCCCCGGTCTTGCAAAGTCTCCTGGGATTGGAAGGACCCCTAT
GAGGTGGGCCACAGCATGGCCTTCCGAGTGCATTTATTCTATAAGAACGGGCAGCCTTTCCCTGCACATC
GGCCTGTGGGACTAAGAGTTCACATCTCTCATGTCGAGCTAGCAGTGGAAATTCCAGTGACCCAGGAAGT
CCTTCAGGAGCCCAATTCCAACGTAGTAAAAGTGGCCTTCACTGTGCGCAAGGCTGGGCGTTATGAAATC
ACAGTGAAGCTTGGTGGATTAAATGTGGCATATAGTCCCTACTACAAAATTTTTCAACCTGGAATGGTGG
TTCCTTCTAAGACCAAAATTGTGTGCCACTTTTCTACTCTTGTATTGACCTGTGGGCAGCCGCACACCCT
TCAAATAGTACCCCGAGATGAGTATGATAATCCCACCAACAATTCCATGTCCTTGAGAGATGAGCACAAT
TACACCTTGTCCATTCATGAGCTCGGCCCTCAAGAAGAAGAGAGTACTGGTGTCTCATTTGAGAAATCAG
TAACATCCAACAGGCAGACTTTCCAGGTGTTCTTGCGACTCACCCTGCATTCTCGAGGCTGCTTCCATGC
TTGCATTTCATACCAAAATCAGCCAATCAATAATGGTGAATTTGACATTATTGTCCTAAGTGAGGATGAG
AAGAATATCGTCGAACGCAATGTGTCCACTTCAGGCGTGAGCATTTACTTTGAGGCTTATCTTTATAATG
CTACCAACTGTAGCAGCACTCCATGGCACCTGCCACCCATGCACATGACCTCTTCCCAGCGCCGGCCATC
CACTGCTGTTGACGAGGAAGATGAAGACTCGCCCTCTGAGTGCCACACCCCTGAGAAGGTGAAGAAACCG
AAGAAGGTGTACTGCTATGTGTCACCAAAGCAATTCTCAGTGAAGGAGTTCTACCTGAAGATCATCCCCT
GGCGCCTTTACACCTTCCGAGTGTGTCCAGGAACAAAATTTTCATACCTTGGTCCTGACCCTGTCCATAA
GCTGCTCACACTGGTGGTGGATGATGGCATTCAACCTCCTGTGGAGCTCAGCTGTAAGGAGAGGAACATT
CTAGCAGCCACTTTTATCCGCTCCCTGCATAAGAACATAGGAGGCTCTGAGACCTTTCAGGACAAGGTGA
ACTTTTTCCAGCGAGAGCTTCGGCAGGTACATATGAAAAGACCACATTCCAAAGTCACCCTGAAGGTCAG
CAGACATGCCTTGTTGGAATCGTCTCTGAAAGCCACTCGGAATTTCTCCATCTCAGATTGGAGCAAGAAC
TTTGAGGTTGTTTTCCAGGATGAAGAAGCTCTGGACTGGGGAGGGCCTCGCCGGGAATGGTTTGAGCTAA
TCTGCAAAGCACTATTTGATACCACCAATCAGCTCTTCACCCGGTTCAGTGACAACAACCAAGCATTAGT
GCATCCCAACCCTAATCGCCCCGCTCATCTGCGCCTGAAAATGTATGAGTTTGCGGGACGGCTCGTGGGC
AAGTGTCTCTATGAGTCCTCTCTAGGAGGAGCCTACAAGCAGTTGGTCCGAGCTCGCTTCACCCGCTCTT
TCCTGGCCCAAATCATAGGACTGCGTATGCATTACAAGTACTTTGAAACAGATGACCCAGAATTCTACAA
ATCTAAAGTTTGTTTTATCCTCAACAATGACATGAGTGAGATGGAGCTGGTCTTTGCAGAAGAGAAATAT
AATAAATCAGGTCAATTGGATAAGGTTGTAGAACTCATGACAGGTGGAGCTCAAACTCCAGTCACCAATG
CGAATAAAATCTTCTATTTAAATTTGCTGGCCCAATATCGGCTGGCCAGTCAAGTGAAAGAGGAGGTGGA
ACATTTCCTAAAAGGCCTGAATGAATTGGTCCCTGAGAACCTTTTGGCTATTTTTGATGAGAATGAGCTT
GAGCTGCTGATGTGTGGGACTGGAGACATCAGTGTGTCTGACTTCAAAGCCCATGCAGTAGTTGTTGGTG
GCTCATGGCATTTCAGAGAAAAGGTCATGAGGTGGTTTTGGACTGTGGTTTCCAGTCTGACCCAGGAGGA
GTTGGCTCGGCTACTTCAGTTCACAACAGGCTCCTCTCAGCTACCACCTGGAGGCTTTGCCGCCCTCTGT
CCCTCATTTCAGATTATTGCCGCTCCGACCCATAGCACGCTGCCTACTGCACACACATGTTTTAACCAGC
TGTGCCTCCCTACATATGACTCCTATGAAGAGGTGCACAGGATGCTGCAGCTGGCCATCAGCGAGGGTTG
CGAGGGCTTTGGCATGCTCTGA

Translation (823 aa):
MFYVIGGITVSVVAFFFTIKFLFELAARVVSFLQNEDRERRGDRTIYDYVRGNYLDPRSCKVSWDWKDPY
EVGHSMAFRVHLFYKNGQPFPAHRPVGLRVHISHVELAVEIPVTQEVLQEPNSNVVKVAFTVRKAGRYEI
TVKLGGLNVAYSPYYKIFQPGMVVPSKTKIVCHFSTLVLTCGQPHTLQIVPRDEYDNPTNNSMSLRDEHN
YTLSIHELGPQEEESTGVSFEKSVTSNRQTFQVFLRLTLHSRGCFHACISYQNQPINNGEFDIIVLSEDE
KNIVERNVSTSGVSIYFEAYLYNATNCSSTPWHLPPMHMTSSQRRPSTAVDEEDEDSPSECHTPEKVKKP
KKVYCYVSPKQFSVKEFYLKIIPWRLYTFRVCPGTKFSYLGPDPVHKLLTLVVDDGIQPPVELSCKERNI
LAATFIRSLHKNIGGSETFQDKVNFFQRELRQVHMKRPHSKVTLKVSRHALLESSLKATRNFSISDWSKN
FEVVFQDEEALDWGGPRREWFELICKALFDTTNQLFTRFSDNNQALVHPNPNRPAHLRLKMYEFAGRLVG
KCLYESSLGGAYKQLVRARFTRSFLAQIIGLRMHYKYFETDDPEFYKSKVCFILNNDMSEMELVFAEEKY
NKSGQLDKVVELMTGGAQTPVTNANKIFYLNLLAQYRLASQVKEEVEHFLKGLNELVPENLLAIFDENEL
ELLMCGTGDISVSDFKAHAVVVGGSWHFREKVMRWFWTVVSSLTQEELARLLQFTTGSSQLPPGGFAALC
PSFQIIAAPTHSTLPTAHTCFNQLCLPTYDSYEEVHRMLQLAISEGCEGFGML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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