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Report for CCDS41920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41920.1 Public Homo sapiens 14 RBM23 24 110 108 CCDS HistoryNCBI Gene:55147Re-query CCDS DB by CCDS ID:41920.1Re-query CCDS DB by GeneID:55147See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41920.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399922.6 ENSP00000382806.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399922.6Link to Ensembl Protein Viewer:ENSP00000382806.2Re-query CCDS DB by Nucleotide ID:ENST00000399922Re-query CCDS DB by Protein ID:ENSP00000382806
Original member Current member NCBI NM_001352765.2 NP_001339694.1 Accepted alive Link to Nucleotide Sequence:NM_001352765.2Link to Protein Sequence:NP_001339694.1Re-query CCDS DB by Nucleotide ID:NM_001352765Re-query CCDS DB by Protein ID:NP_001339694Link to BLAST:NP_001339694.1
Original member Current member NCBI NM_018107.5 NP_060577.3 Accepted alive Link to Nucleotide Sequence:NM_018107.5Link to Protein Sequence:NP_060577.3Re-query CCDS DB by Nucleotide ID:NM_018107Re-query CCDS DB by Protein ID:NP_060577Link to BLAST:NP_060577.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001339694.1 423 Q86U06-2 423 100% 0 0
NP_060577.3 423 Q86U06-2 423 100% 0 0

Chromosomal Locations for CCDS 41920.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 22901730 22901733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22901814 22901883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22901980 22902099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22902187 22902382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22904261 22904326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22904875 22905012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22905094 22905246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22905336 22905453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22905606 22905659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22906195 22906368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22909483 22909595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22911328 22911393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGCATCTGATGACTTTGACATAGTGATTGAGGCCATGCTGGAAGCTCCCTATAAAAAAGAAGAGGATG
AGCAACAAAGGAAAGAAGTTAAAAAGGATTATCCTAGCAATACCACCAGCAGCACCAGCAACAGTGGCAA
TGAGACCAGTGGAAGCAGCACCATCGGGGAGACAAGCAATCGTAGTCGAGATCGGGATCGGTATAGACGG
AGAAATAGTCGGAGCCGAAGTCCAGGTCGGCAGTGTCGTCACCGTAGCCGTAGCTGGGATCGTCGACATG
GTAGTGAGTCGCGAAGTCGGGACCATCGTCGTGAGGATCGTGTGCATTACAGGAGTCCTCCACTTGCCAC
TGGTTATAGGTATGGACACAGTAAGAGTCCTCATTTCAGAGAGAAGAGCCCAGTCAGGGAGCCAGTTGAT
AATCTGAGTCCTGAGGAGCGTGATGCCCGCACAGTTTTCTGTATGCAGTTAGCTGCCCGAATTCGGCCTC
GAGATCTGGAGGACTTTTTCTCTGCTGTAGGCAAGGTTCGCGATGTACGTATCATCTCAGATCGGAACTC
ACGTCGTTCTAAGGGCATTGCCTACGTGGAATTCTGTGAAATCCAGTCTGTGCCACTGGCCATTGGGCTG
ACTGGGCAGCGGTTGCTGGGAGTGCCTATCATTGTACAGGCTTCACAGGCAGAGAAAAACCGACTGGCAG
CCATGGCCAACAACCTGCAAAAGGGCAATGGTGGACCAATGCGCCTCTATGTGGGTTCCCTGCACTTCAA
TATCACTGAAGACATGCTCCGGGGCATCTTTGAGCCCTTTGGTAAAATTGATAATATTGTCCTGATGAAG
GACTCAGATACAGGCCGCTCTAAAGGTTATGGTTTCATCACGTTCTCTGATTCTGAGTGTGCCCGGCGGG
CCCTGGAACAGTTGAATGGGTTTGAGCTTGCTGGTCGACCTATGAGGGTTGGCCATGTGACTGAGCGACT
GGATGGTGGCACAGACATCACTTTTCCTGATGGGGACCAGGAGCTGGATCTGGGATCAGCAGGTGGACGT
TTTCAGCTCATGGCAAAACTGGCAGAAGGCGCTGGAATCCAACTGCCAAGCACTGCTGCTGCTGCTGCTG
CCGCCGCCGCCCAGGCTGCTGCCTTGCAACTGAATGGAGCAGTTCCCTTGGGGGCCCTGAATCCAGCAGC
TCTGACTGCTCTGAGTCCAGCCCTGAACCTTGCCTCCCAGTGTTTCCAGCTCTCCAGCCTCTTTACCCCC
CAGACCATGTAA

Translation (423 aa):
MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSNRSRDRDRYRR
RNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATGYRYGHSKSPHFREKSPVREPVD
NLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGL
TGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMK
DSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQELDLGSAGGR
FQLMAKLAEGAGIQLPSTAAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPALNLASQCFQLSSLFTP
QTM


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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