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Report for CCDS41779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41779.1 Public Homo sapiens 12 TROAP 24 110 108 CCDS HistoryNCBI Gene:10024Re-query CCDS DB by CCDS ID:41779.1Re-query CCDS DB by GeneID:10024See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41779.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380327.9 ENSP00000369684.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380327.9Link to Ensembl Protein Viewer:ENSP00000369684.5Re-query CCDS DB by Nucleotide ID:ENST00000380327Re-query CCDS DB by Protein ID:ENSP00000369684
Original member Current member NCBI NM_001100620.3 NP_001094090.1 Accepted alive Link to Nucleotide Sequence:NM_001100620.3Link to Protein Sequence:NP_001094090.1Re-query CCDS DB by Nucleotide ID:NM_001100620Re-query CCDS DB by Protein ID:NP_001094090Link to BLAST:NP_001094090.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094090.1 144 Q12815-2 144 100% 0 0

Chromosomal Locations for CCDS 41779.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 49323609 49323752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49323845 49324037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49324155 49324252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGACCACCCGGCAAGCCACGAAGGATCCCCTCCTCCGGGGTGTATCTCCTACCCCTAGCAAGATTCCGG
TACGCTCTCAGAAACGCACGCCTTTCCCCACTGTTACATCGTGCGCCGTGGACCAGGAGAACCAAGATCC
AAGGAGATGGGTGCAGAAACCACCGCTCAATATTCAACGCCCCCTCGTTGATTCAGCAGGCCCCAGGCCG
AAAGCCAGGCACCAGGCAGAGACATCACAAAGATTGGTGGGGATCAGTCAGCCTCGGAACCCCTTGGAAG
AGCTCAGGCCTAGCCCTAGGGGTCAAAATGTGGGGCCTGGGCCCCCTGCCCAGACAGTCCTGGTCCCAGC
TCCTGGAAAGCTCTTTGCTCTTAGAAGATCTCCCTTTCCTCCAGCAAAATGTCATCTCGCCAGGTGCCAT
GGCTTGTACCTGTAA

Translation (144 aa):
MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQRPLVDSAGPRP
KARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTVLVPAPGKLFALRRSPFPPAKCHLARCH
GLYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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