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Report for CCDS4171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4171.1 Public Homo sapiens 5 SKP1 24 110 108 CCDS HistoryNCBI Gene:6500Re-query CCDS DB by CCDS ID:4171.1Re-query CCDS DB by GeneID:6500See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4171.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000353411.11 ENSP00000231487.9 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000353411.11Link to Ensembl Protein Viewer:ENSP00000231487.9Re-query CCDS DB by Nucleotide ID:ENST00000353411Re-query CCDS DB by Protein ID:ENSP00000231487
Original member Current member EBI ENST00000522855.5 ENSP00000429686.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522855.5Link to Ensembl Protein Viewer:ENSP00000429686.1Re-query CCDS DB by Nucleotide ID:ENST00000522855Re-query CCDS DB by Protein ID:ENSP00000429686
Original member Current member EBI ENST00000517625.5 ENSP00000429961.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000517625.5Link to Ensembl Protein Viewer:ENSP00000429961.1Re-query CCDS DB by Nucleotide ID:ENST00000517625Re-query CCDS DB by Protein ID:ENSP00000429961
Original member Current member NCBI NM_170679.3 NP_733779.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_170679.3Link to Protein Sequence:NP_733779.1Re-query CCDS DB by Nucleotide ID:NM_170679Re-query CCDS DB by Protein ID:NP_733779Link to BLAST:NP_733779.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_733779.1 163 P63208 163 100% 0 0

Chromosomal Locations for CCDS 4171.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134157733 134157768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134158455 134158595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134160987 134161130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134167170 134167243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134173926 134174022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGCCTTCAATTAAGTTGCAGAGTTCTGATGGAGAGATATTTGAAGTTGATGTGGAAATTGCCAAACAAT
CTGTGACTATTAAGACCATGTTGGAAGATTTGGGAATGGATGATGAAGGAGATGATGACCCAGTTCCTCT
ACCAAATGTGAATGCAGCAATATTAAAAAAGGTCATTCAGTGGTGCACCCACCACAAGGATGACCCTCCT
CCTCCTGAAGATGATGAGAACAAAGAAAAGCGAACAGATGATATCCCTGTTTGGGACCAAGAATTCCTGA
AAGTTGACCAAGGAACACTTTTTGAACTCATTCTGGCTGCAAACTACTTAGACATCAAAGGTTTGCTTGA
TGTTACATGCAAGACTGTTGCCAATATGATCAAGGGGAAAACTCCTGAGGAGATTCGCAAGACCTTCAAT
ATCAAAAATGACTTTACTGAAGAGGAGGAAGCCCAGGTACGCAAAGAGAACCAGTGGTGTGAAGAGAAGT
GA

Translation (163 aa):
MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPP
PPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN
IKNDFTEEEEAQVRKENQWCEEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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